Homologs in group_1998

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_15035 FBDBKF_15035 64.3 Morganella morganii S1 yggT Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family
EHELCC_11210 EHELCC_11210 64.3 Morganella morganii S2 yggT Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family
NLDBIP_11555 NLDBIP_11555 64.3 Morganella morganii S4 yggT Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family
LHKJJB_11415 LHKJJB_11415 64.3 Morganella morganii S3 yggT Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family
HKOGLL_10025 HKOGLL_10025 64.3 Morganella morganii S5 yggT Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family
F4V73_RS12415 F4V73_RS12415 62.1 Morganella psychrotolerans - YggT family protein

Distribution of the homologs in the orthogroup group_1998

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_1998

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P52059 3e-62 194 53 2 179 3 None Uncharacterized protein in proC 3'region Vibrio alginolyticus
P64564 2.38e-57 181 50 3 185 3 yggT Uncharacterized protein YggT Escherichia coli (strain K12)
P64565 2.38e-57 181 50 3 185 3 yggT Uncharacterized protein YggT Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P64566 2.38e-57 181 50 3 185 3 yggT Uncharacterized protein YggT Escherichia coli O157:H7
P44097 1.25e-35 125 38 3 180 3 HI_1036 Uncharacterized protein HI_1036 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P25254 4.62e-33 119 41 1 180 3 PA0392 Uncharacterized protein PA0392 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q8U530 2.02e-05 45 33 1 74 3 Atu2659.1 Uncharacterized protein Atu2659.1 Agrobacterium fabrum (strain C58 / ATCC 33970)
Q8U530 7.78e-05 43 47 0 34 3 Atu2659.1 Uncharacterized protein Atu2659.1 Agrobacterium fabrum (strain C58 / ATCC 33970)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS01595
Feature type CDS
Gene -
Product YggT family protein
Location 384724 - 385287 (strand: -1)
Length 564 (nucleotides) / 187 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1998
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF02325 YGGT family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0762 Posttranslational modification, protein turnover, chaperones (O) O Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02221 YggT family protein - -

Protein Sequence

MNFLNFVILTLIQLYISVLLLRVWMQCVRADFYNPFSQFVVKITQPVVRPLRRIIPSIGSIDTASVILAYVLVLLEIILPSYLSGAGGAIPFSLVLPFAFIELLTAAGKIIFWMIIIRAILSWVSQGRNPIDHLLFQLTEPLMAPIRRVIPAMGGLDFSAMIVILILYALNYLRVDVLQWLITMTLY

Flanking regions ( +/- flanking 50bp)

AACGAGCGCAAGAAATGGAAAAACAGTTTTAATTTCATCAGGGCCAACTAATGAACTTTTTAAATTTCGTCATTCTGACTCTTATTCAACTCTATATTTCCGTGCTACTACTTCGTGTATGGATGCAATGTGTAAGAGCTGATTTTTATAATCCGTTTTCACAATTTGTGGTTAAAATTACCCAACCTGTTGTGCGCCCATTAAGAAGAATTATCCCCTCTATTGGCTCTATTGATACTGCTTCGGTCATCTTGGCATATGTTTTAGTGTTATTAGAAATTATCCTCCCTTCTTACTTATCCGGAGCAGGTGGTGCTATTCCATTTTCTTTAGTCCTACCCTTCGCATTTATTGAATTACTCACCGCAGCAGGTAAGATTATTTTTTGGATGATTATCATCCGTGCAATTCTCAGTTGGGTCAGTCAAGGACGTAATCCTATCGATCATCTGCTCTTCCAATTAACTGAGCCTTTAATGGCCCCAATTCGCCGTGTTATTCCGGCAATGGGAGGATTAGATTTCTCAGCCATGATTGTTATCCTGATCCTTTATGCCCTTAATTATTTACGTGTAGATGTTTTACAGTGGCTAATCACCATGACACTTTACTAAGGAAGATAATATGCAAAAAGTGGTTCTTGCTACTGGAAACCCCGGTAAAG