Homologs in group_3657

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3 homologs were identified in 3 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_12465 FBDBKF_12465 97.4 Morganella morganii S1 - 3'-5' exoribonuclease
EHELCC_19220 EHELCC_19220 100.0 Morganella morganii S2 - 3'-5' exoribonuclease
LHKJJB_19080 LHKJJB_19080 100.0 Morganella morganii S3 - 3'-5' exoribonuclease

Distribution of the homologs in the orthogroup group_3657

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3657

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P04536 2.83e-06 49 26 5 160 1 dexA Exodeoxyribonuclease Enterobacteria phage T4

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_19190
Feature type CDS
Gene -
Product 3'-5' exoribonuclease
Location 18576 - 19145 (strand: 1)
Length 570 (nucleotides) / 189 (amino acids)

Contig

Accession ZDB_545
Length 23384 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3657
Orthogroup size 4
N. genomes 4

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Genomic region

Domains

PF16473 3'-5' exoribonuclease Rv2179c-like domain

Protein Sequence

MDKFKHLMIDLETMGNKPDSAIVAIAAVPFDMVSGVTDDALFYEIIDLRSSEKYGGSIDADTVLWWLGKSDNARSEIINSEKAIDLPDALTRLSSFASEFCEERVQVWGNGSNFDNVILRTAYENCAITPFWKHWNDRDVRTIVELGRNAGIDPKKDFPFVGEAHNALDDALHQVNYVVAIHQHLFKNL

Flanking regions ( +/- flanking 50bp)

TAACGAAGATTTTACGTTTAGCCTGGCTAATAAAATTAGAGGATCCCAAAATGGATAAATTCAAACACCTGATGATTGACCTTGAAACTATGGGTAATAAGCCGGATTCCGCTATTGTGGCTATTGCTGCTGTGCCGTTCGACATGGTTTCCGGTGTAACTGATGATGCACTTTTTTATGAAATTATCGACCTGCGCAGCAGCGAAAAATACGGCGGTAGTATCGACGCAGACACCGTGCTGTGGTGGCTGGGTAAAAGCGATAATGCCCGGAGTGAGATCATTAACAGCGAAAAAGCTATTGATCTGCCGGATGCGCTGACCCGCCTGAGTTCGTTTGCTTCAGAATTCTGTGAAGAACGAGTGCAGGTATGGGGTAACGGAAGTAATTTCGATAATGTGATCCTGCGTACTGCATACGAAAATTGCGCAATCACTCCATTCTGGAAGCACTGGAATGACCGGGATGTGCGTACCATTGTCGAGCTTGGCCGCAATGCCGGCATCGACCCGAAAAAAGATTTTCCGTTTGTTGGTGAAGCACACAATGCACTGGATGATGCATTGCACCAGGTGAATTACGTGGTCGCAATCCACCAGCATTTATTTAAAAACCTCTAATCGTATACGGCGATGTGTGGAGAGAAAACTATGGCTATCGGAAAACTTAT