Homologs in group_1756

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_12230 FBDBKF_12230 100.0 Morganella morganii S1 priA primosomal protein N'
EHELCC_14075 EHELCC_14075 100.0 Morganella morganii S2 priA primosomal protein N'
LHKJJB_15440 LHKJJB_15440 100.0 Morganella morganii S3 priA primosomal protein N'
HKOGLL_14560 HKOGLL_14560 100.0 Morganella morganii S5 priA primosomal protein N'
F4V73_RS17060 F4V73_RS17060 94.0 Morganella psychrotolerans priA primosomal protein N'
PMI_RS15920 PMI_RS15920 71.6 Proteus mirabilis HI4320 priA primosomal protein N'

Distribution of the homologs in the orthogroup group_1756

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1756

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P17888 0.0 1036 67 1 733 1 priA Primosomal protein N' Escherichia coli (strain K12)
P44647 0.0 741 51 10 739 3 priA Primosomal protein N' Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P94461 6.51e-133 415 36 5 579 3 priA Primosomal protein N' Bacillus subtilis (strain 168)
P57220 2.89e-125 393 30 10 734 3 priA Primosomal protein N' Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
P05445 1.95e-124 393 35 11 795 3 priA Primosomal protein N' Rhodospirillum rubrum
Q9Z6Y2 5.34e-123 388 33 17 756 3 priA Primosomal protein N' Chlamydia pneumoniae
O84783 5.88e-122 385 34 17 758 3 priA Primosomal protein N' Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)
Q9PLE5 4.81e-121 383 33 18 758 3 priA Primosomal protein N' Chlamydia muridarum (strain MoPn / Nigg)
Q8KA15 1.1e-117 373 28 11 739 3 priA Primosomal protein N' Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P74397 3.46e-113 364 38 12 586 3 priA Primosomal protein N' Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q1RI08 1.36e-111 355 35 7 534 3 priA Primosomal protein N' Rickettsia bellii (strain RML369-C)
Q4UL64 1.5e-108 347 34 7 534 3 priA Primosomal protein N' Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)
Q4UL64 0.000214 48 33 3 103 3 priA Primosomal protein N' Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)
Q92HH1 7.76e-108 345 34 7 534 3 priA Primosomal protein N' Rickettsia conorii (strain ATCC VR-613 / Malish 7)
Q92HH1 3.01e-05 51 30 3 103 3 priA Primosomal protein N' Rickettsia conorii (strain ATCC VR-613 / Malish 7)
Q9ZD10 5.74e-107 343 34 7 535 3 priA Primosomal protein N' Rickettsia prowazekii (strain Madrid E)
O83258 1.83e-106 342 36 6 534 3 priA Primosomal protein N' Treponema pallidum (strain Nichols)
Q68WJ4 3.67e-104 335 34 8 535 3 priA Primosomal protein N' Rickettsia typhi (strain ATCC VR-144 / Wilmington)
Q45032 5.25e-85 285 30 6 515 3 priA Primosomal protein N' Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31)
Q9WY22 2.63e-74 258 27 9 538 3 priA Primosomal protein N' Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
O25149 1.94e-73 253 31 10 533 3 priA Primosomal protein N' Helicobacter pylori (strain ATCC 700392 / 26695)
Q9ZKE4 1.18e-71 248 31 9 533 3 priA Primosomal protein N' Helicobacter pylori (strain J99 / ATCC 700824)
Q9CCQ3 9.72e-15 81 26 8 395 3 priA Probable primosomal protein N' Mycobacterium leprae (strain TN)
P9WMQ9 4.08e-14 79 25 10 392 1 priA Probable primosomal protein N' Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P0A5A6 4.08e-14 79 25 10 392 3 priA Probable primosomal protein N' Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
P9WMQ8 5.41e-13 76 25 10 391 3 priA Probable primosomal protein N' Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Q9ZJ57 1.91e-09 65 25 2 183 3 mfd Transcription-repair-coupling factor Helicobacter pylori (strain J99 / ATCC 700824)
O26066 5.69e-09 63 25 2 181 3 mfd Transcription-repair-coupling factor Helicobacter pylori (strain ATCC 700392 / 26695)
P57381 6.8e-08 59 30 3 149 3 mfd Transcription-repair-coupling factor Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
O51568 1.72e-07 58 29 3 140 3 mfd Transcription-repair-coupling factor Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31)
F4JFJ3 2.9e-07 57 30 4 151 2 At3g02060 ATP-dependent DNA helicase At3g02060, chloroplastic Arabidopsis thaliana
O52236 3.25e-07 57 31 7 173 3 mfd Transcription-repair-coupling factor Myxococcus xanthus
P30958 3.98e-07 57 29 5 172 1 mfd Transcription-repair-coupling factor Escherichia coli (strain K12)
Q55750 5.27e-07 57 30 5 152 3 mfd Transcription-repair-coupling factor Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q89AK2 2.69e-06 54 24 5 190 3 mfd Transcription-repair-coupling factor Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
Q54900 1.54e-05 52 29 3 147 3 recG ATP-dependent DNA helicase RecG Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
P45128 2.47e-05 51 26 4 172 3 mfd Transcription-repair-coupling factor Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
O67837 2.49e-05 51 29 3 134 3 recG ATP-dependent DNA helicase RecG Aquifex aeolicus (strain VF5)
Q4L3G0 4.07e-05 50 28 5 174 3 mfd Transcription-repair-coupling factor Staphylococcus haemolyticus (strain JCSC1435)
Q55681 4.84e-05 50 26 4 175 3 recG ATP-dependent DNA helicase RecG Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
O69460 6.62e-05 50 29 2 134 3 recG ATP-dependent DNA helicase RecG Mycobacterium leprae (strain TN)
P39145 0.00011 49 25 3 166 2 comFA ComF operon protein 1 Bacillus subtilis (strain 168)
Q8NXZ6 0.000112 49 30 7 174 3 mfd Transcription-repair-coupling factor Staphylococcus aureus (strain MW2)
Q6GBY5 0.000112 49 30 7 174 3 mfd Transcription-repair-coupling factor Staphylococcus aureus (strain MSSA476)
Q5HIH2 0.000113 49 30 7 174 3 mfd Transcription-repair-coupling factor Staphylococcus aureus (strain COL)
Q6GJG8 0.000114 49 30 7 174 3 mfd Transcription-repair-coupling factor Staphylococcus aureus (strain MRSA252)
Q2G0R8 0.000115 49 30 7 174 3 mfd Transcription-repair-coupling factor Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q2FJD8 0.000115 49 30 7 174 3 mfd Transcription-repair-coupling factor Staphylococcus aureus (strain USA300)
Q7A7B2 0.000117 49 30 7 174 1 mfd Transcription-repair-coupling factor Staphylococcus aureus (strain N315)
Q99WA0 0.000117 49 30 7 174 3 mfd Transcription-repair-coupling factor Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q2YVY2 0.000125 49 30 7 174 3 mfd Transcription-repair-coupling factor Staphylococcus aureus (strain bovine RF122 / ET3-1)
Q8CMT1 0.00014 49 29 7 177 3 mfd Transcription-repair-coupling factor Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HRQ2 0.000141 49 29 7 177 3 mfd Transcription-repair-coupling factor Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
P9WMQ5 0.000218 48 27 10 213 1 mfd Transcription-repair-coupling factor Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WMQ4 0.000218 48 27 10 213 3 mfd Transcription-repair-coupling factor Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P64327 0.000218 48 27 10 213 3 mfd Transcription-repair-coupling factor Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
Q49V12 0.000229 48 29 7 174 3 mfd Transcription-repair-coupling factor Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41)
P37474 0.000239 48 28 6 170 3 mfd Transcription-repair-coupling factor Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_15170
Feature type CDS
Gene priA
Product primosomal protein N'
Location 31149 - 33350 (strand: -1)
Length 2202 (nucleotides) / 733 (amino acids)

Contig

Accession ZDB_531
Length 138641 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1756
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00270 DEAD/DEAH box helicase
PF00271 Helicase conserved C-terminal domain
PF17764 3'DNA-binding domain (3'BD)
PF18074 Primosomal protein N C-terminal domain
PF18319 PriA DNA helicase Cys-rich region (CRR) domain
PF21213 Primosomal protein N'-like, winged helix

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1198 Replication, recombination and repair (L) L Primosomal protein N' (replication factor Y) - superfamily II helicase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K04066 primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] Homologous recombination -

Protein Sequence

MTVVRVILPVPLTQTFDYLLPDDMPRPVPGARVIVPFGRQKQAVGIVAELAETSTFSPEKLKPVIACPDDDTLFPGDLWPLLNWAAQYYHYPLGEVLFHAMPILLRQGKEAAFAPLWCWEVTPEGREIDIHTLKRSPKQQQALACLRRQPVYRHQTAEYELSDSALQGLKKKNLITLNDVQPESKPWQPGFAVTGERLKLNTEQATAVGAIRAEQHQFSPWLLDGVTGSGKTEVYLSVLENVLAEGRQALVLVPEIGLTPQTIARFRARFQAPVDILHSGMNDSERLAVWLRAKRGETAIVIGTRSALFTPFTSLGIIIIDEEHDGSYKQQDGWRYHARDLAVFRAKKNDIPIVMGTATPSLETLFNVRQKKYKVLPLTQRAGNAQLADQHLLDLKGLPLTSGLSQPLIKRIRHHLAADNQVILFLNRRGFAPAMLCHECGWIAECPRCDHFYTLHQNHRMLRCHQCDSQRPVPKQCPQCGSTQLVPVGLGTEQLEESITPLFPDIPVTRLDRDTTSRKGELEQHLADVHQGGARILIGTQMLAKGHHFPDVTLVALLDVDGALFSGDFRAAERFAQLYTQVSGRAGRAGKRGEVILQTHHPEHPLLTVLLEKGYAAFAAQALNERQSVCLPPYTSQVMIRAEDQNNQRANAFLQTVRQLFESHPLRDEHFWLMGPLPAIQAKRGGRFRWQLLLQHPSRSQLQKIVAQAIPYIQQMPESRKVRWNVDVDPTDG

Flanking regions ( +/- flanking 50bp)

CCGCTGTGTATTTTTTACACGCCGGCGCTCTGCCGATGATGGACATTATAATGACAGTCGTCCGGGTGATATTACCAGTACCTCTGACACAAACATTTGACTATTTACTGCCTGATGATATGCCCCGCCCAGTACCGGGGGCACGGGTGATTGTGCCGTTCGGACGACAGAAACAGGCAGTCGGCATTGTGGCTGAACTGGCGGAAACCAGCACCTTCAGCCCAGAGAAACTCAAGCCGGTCATTGCCTGCCCGGATGATGACACGCTGTTTCCCGGGGATCTGTGGCCGCTGCTGAACTGGGCGGCGCAGTATTATCACTATCCGTTAGGGGAAGTGCTGTTTCATGCCATGCCGATTTTGCTGCGTCAGGGCAAAGAGGCCGCCTTTGCACCACTGTGGTGCTGGGAAGTGACTCCGGAAGGGCGTGAGATTGATATCCATACCCTCAAACGCTCCCCGAAACAGCAGCAGGCGCTGGCCTGTCTGCGCCGTCAGCCGGTTTACCGCCATCAGACTGCGGAATATGAACTCAGCGACAGTGCATTGCAGGGACTGAAAAAGAAAAACCTGATCACTCTGAACGATGTGCAGCCGGAGAGCAAACCCTGGCAGCCGGGATTTGCCGTCACCGGCGAACGCCTGAAACTCAATACCGAACAGGCCACCGCTGTGGGGGCGATCCGCGCAGAGCAGCATCAGTTTTCGCCCTGGCTGCTGGACGGTGTAACCGGCTCCGGGAAAACGGAAGTGTATCTCAGTGTGCTGGAAAATGTGCTGGCCGAAGGCCGCCAGGCCCTGGTACTGGTGCCGGAAATCGGCCTGACCCCCCAGACCATCGCCCGCTTCCGCGCCCGTTTTCAGGCACCGGTGGATATTCTCCATTCCGGCATGAATGACAGCGAGCGTCTGGCTGTCTGGCTGCGGGCAAAGCGCGGGGAGACCGCCATTGTTATCGGTACCCGCTCCGCGCTGTTCACGCCGTTTACCTCACTCGGCATCATTATTATCGATGAGGAGCACGACGGCTCCTATAAACAGCAGGACGGCTGGCGTTATCACGCCCGTGATCTGGCCGTGTTCCGTGCCAAGAAAAATGATATTCCGATTGTGATGGGCACGGCGACCCCGTCACTGGAAACCCTGTTTAATGTCCGGCAGAAAAAATACAAAGTCCTGCCGCTGACGCAGCGGGCGGGAAATGCACAGCTTGCCGACCAGCATCTGCTCGACCTGAAAGGGCTGCCGCTGACCTCCGGGCTGTCACAACCGCTGATCAAACGCATCCGCCACCATCTGGCCGCAGATAATCAGGTTATTCTGTTCCTCAACCGGCGCGGCTTTGCCCCGGCAATGCTGTGCCACGAGTGCGGCTGGATAGCGGAATGTCCGCGCTGTGACCATTTTTACACCCTGCACCAGAACCACCGCATGCTGCGCTGCCATCAGTGTGACAGCCAGCGCCCGGTACCGAAACAGTGCCCGCAGTGCGGCTCCACACAGCTGGTGCCGGTCGGGCTGGGCACCGAACAGCTGGAGGAGAGCATCACCCCGCTGTTCCCGGATATTCCGGTCACGCGGCTGGATCGCGATACCACCAGCCGCAAAGGCGAGCTGGAGCAGCATCTGGCGGATGTGCATCAGGGCGGTGCCCGTATCCTGATCGGTACTCAGATGCTGGCCAAAGGGCATCACTTCCCGGATGTCACCCTTGTGGCACTGCTGGATGTCGACGGCGCGCTGTTCTCCGGTGATTTCCGCGCGGCGGAGCGCTTTGCACAGCTCTACACCCAGGTCTCCGGCCGGGCGGGGCGTGCAGGGAAACGCGGCGAGGTCATTTTACAGACTCACCATCCTGAGCATCCTCTGCTGACCGTGCTGCTGGAAAAAGGCTATGCCGCCTTCGCCGCACAGGCACTGAATGAGCGGCAGAGTGTTTGTCTGCCGCCTTACACCAGCCAGGTGATGATCCGTGCCGAAGATCAGAATAACCAGCGGGCGAATGCATTCCTGCAGACGGTACGTCAGCTGTTCGAATCCCACCCGCTGCGGGATGAGCATTTCTGGCTGATGGGGCCGCTGCCTGCTATCCAGGCCAAACGCGGCGGACGTTTCCGCTGGCAGTTGCTGTTACAGCATCCGTCCCGCAGTCAGTTGCAGAAAATTGTCGCGCAGGCCATTCCGTATATTCAGCAGATGCCGGAAAGCCGGAAAGTCCGCTGGAATGTGGATGTCGATCCGACCGACGGCTGAGACTGACGTCTCACGGAAAGTGCGCGCTGTCTCAAAAAATTGAGATAACT