Homologs in group_1531

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09895 FBDBKF_09895 100.0 Morganella morganii S1 ybfE LexA regulated protein
EHELCC_04695 EHELCC_04695 100.0 Morganella morganii S2 ybfE LexA regulated protein
LHKJJB_13935 LHKJJB_13935 100.0 Morganella morganii S3 ybfE LexA regulated protein
HKOGLL_12600 HKOGLL_12600 100.0 Morganella morganii S5 ybfE LexA regulated protein
F4V73_RS00455 F4V73_RS00455 89.7 Morganella psychrotolerans ybfE LexA regulated protein
PMI_RS02685 PMI_RS02685 77.3 Proteus mirabilis HI4320 ybfE LexA regulated protein

Distribution of the homologs in the orthogroup group_1531

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1531

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AAU9 9.31e-43 140 78 0 88 4 ybfE Uncharacterized protein YbfE Shigella flexneri
P0AAU7 9.31e-43 140 78 0 88 1 ybfE Uncharacterized protein YbfE Escherichia coli (strain K12)
P0AAU8 9.31e-43 140 78 0 88 4 ybfE Uncharacterized protein YbfE Escherichia coli O157:H7

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_04695
Feature type CDS
Gene ybfE
Product LexA regulated protein
Location 266534 - 266998 (strand: 1)
Length 465 (nucleotides) / 154 (amino acids)

Contig

Accession ZDB_520
Length 336657 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1531
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01402 Ribbon-helix-helix protein, copG family

Protein Sequence

MRPVTHPAELPHRRADGGMLINLHEIRGNRPRSGGGKRDGGVSLRVYHCNPPFRSKIMAKEQTDRTTLDLFADERRPGRPKTNPLSRDEQLRINKRNQLRRDKVNGLRRVELKLNADIVDALNQLAYEENVNRGELIEQILLDYLQRSDLCTKL

Flanking regions ( +/- flanking 50bp)

CTTTTTTTTCTAATATATTCATAACGATAATTGCAACAGCGAATCCATTGATGCGGCCTGTCACCCATCCTGCAGAGCTGCCGCACAGGCGGGCAGACGGTGGGATGTTAATCAATCTGCACGAAATCCGCGGTAACAGGCCGCGAAGCGGTGGCGGTAAGCGGGATGGCGGTGTATCATTGCGCGTTTATCATTGTAATCCGCCTTTTCGTAGTAAAATTATGGCCAAAGAACAAACGGATCGTACCACGCTGGATTTGTTCGCTGACGAACGCCGGCCCGGACGACCGAAAACAAACCCGCTCTCCCGTGATGAGCAGTTGCGGATTAACAAACGCAATCAGCTGCGGCGTGACAAAGTTAACGGATTACGCCGCGTTGAGCTCAAACTGAATGCGGATATTGTCGATGCCCTGAACCAGCTGGCATACGAAGAAAACGTGAACCGGGGCGAGCTTATCGAGCAAATTCTGCTTGATTACCTTCAGCGTTCAGATTTATGCACCAAATTGTGAGACGACACACCACACAAATTTGACAGACTTCAAATACTGTTTTCGTCAGA