Homologs in group_238

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7 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01805 FBDBKF_01805 100.0 Morganella morganii S1 cydB cytochrome d ubiquinol oxidase subunit II
EHELCC_02275 EHELCC_02275 100.0 Morganella morganii S2 cydB cytochrome d ubiquinol oxidase subunit II
LHKJJB_00850 LHKJJB_00850 100.0 Morganella morganii S3 cydB cytochrome d ubiquinol oxidase subunit II
HKOGLL_00890 HKOGLL_00890 100.0 Morganella morganii S5 cydB cytochrome d ubiquinol oxidase subunit II
F4V73_RS04130 F4V73_RS04130 91.6 Morganella psychrotolerans cydB cytochrome d ubiquinol oxidase subunit II
PMI_RS06945 PMI_RS06945 73.4 Proteus mirabilis HI4320 cydB cytochrome d ubiquinol oxidase subunit II
PMI_RS11755 PMI_RS11755 63.0 Proteus mirabilis HI4320 cydB cytochrome d ubiquinol oxidase subunit II

Distribution of the homologs in the orthogroup group_238

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_238

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P26458 6.76e-41 150 31 13 374 1 appB Cytochrome bd-II ubiquinol oxidase subunit 2 Escherichia coli (strain K12)
P0ABK2 5.49e-37 139 28 9 365 1 cydB Cytochrome bd-I ubiquinol oxidase subunit 2 Escherichia coli (strain K12)
P0ABK3 5.49e-37 139 28 9 365 3 cydB Cytochrome bd-I ubiquinol oxidase subunit 2 Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ABK4 5.49e-37 139 28 9 365 3 cydB Cytochrome bd-I ubiquinol oxidase subunit 2 Escherichia coli O157:H7
P94365 3.48e-34 131 29 14 347 3 cydB Cytochrome bd ubiquinol oxidase subunit 2 Bacillus subtilis (strain 168)
P45020 3.69e-32 126 29 12 374 3 HI_1075 Probable cytochrome oxidase subunit 2 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_01185
Feature type CDS
Gene cydB
Product cytochrome d ubiquinol oxidase subunit II
Location 243043 - 244050 (strand: 1)
Length 1008 (nucleotides) / 335 (amino acids)

Contig

Accession ZDB_519
Length 680340 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_238
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF02322 Cytochrome bd terminal oxidase subunit II

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1294 Energy production and conversion (C) C Cytochrome bd-type quinol oxidase, subunit 2

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K00426 cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] Oxidative phosphorylation
Two-component system		 Cytochrome bd ubiquinol oxidase

Protein Sequence

MGIDLPLIWFVIIIFSTLMYIVMDGFDLGIGILYPFVKSNADRDLMMNSVAPVWDGNETWLVLGGAALFGAFPLAYAVILDALAIPLTLMLVALIFRGVAFEFRFKADEHHRYFWDRAFLISSVIATFVQGVVVGSVIEGFPVANRAFTGGAFDWLAPFPLFCGFGLVIAYALLGCGWLVMKTEGHLQQQMYKVLKPLTLVMLAILAVISLWTPLAHDAIAARWFSFPNILFFLPVPLLVLVCVAALFRSVSRHLHYTPFFAALGLVFLGFTGLGISIWPMIIPPVIDYKMAAAPGESLSFMLVGALFIIPVILVYTWWSYYVFRGKITHDQGYH

Flanking regions ( +/- flanking 50bp)

CATCTATATGATGAAACTGATCCGCAAAGGTATCGCGCCGGAGGTGTCTCATGGGCATTGATTTACCCCTGATTTGGTTCGTCATTATTATATTCAGTACGCTGATGTATATCGTGATGGACGGCTTTGACCTCGGTATCGGCATCCTCTATCCCTTTGTGAAAAGCAATGCTGACCGCGACCTGATGATGAACAGTGTCGCCCCGGTCTGGGACGGTAACGAAACCTGGCTGGTGCTGGGCGGAGCCGCGTTGTTCGGTGCTTTCCCGCTCGCCTATGCCGTGATTCTGGATGCACTCGCCATTCCGCTGACACTGATGCTGGTGGCGTTAATCTTCCGTGGCGTGGCTTTTGAGTTCCGCTTTAAAGCAGATGAACATCACCGTTATTTCTGGGATCGCGCGTTTCTGATCAGCTCAGTTATCGCCACTTTTGTGCAGGGTGTGGTCGTCGGCAGCGTGATTGAAGGTTTTCCGGTCGCAAACCGTGCCTTTACCGGCGGGGCCTTTGACTGGCTGGCGCCGTTCCCGCTGTTCTGCGGTTTCGGTCTGGTGATCGCTTATGCCCTGCTCGGCTGCGGCTGGCTGGTGATGAAAACGGAAGGTCATTTACAGCAGCAGATGTATAAGGTGCTGAAACCACTGACCCTGGTGATGCTGGCGATACTGGCTGTGATCAGTCTGTGGACACCGCTGGCGCATGACGCCATTGCGGCGCGCTGGTTCAGCTTCCCGAACATTTTGTTCTTCCTGCCGGTGCCGCTGCTGGTGCTTGTCTGTGTCGCGGCGCTGTTCCGCAGTGTCAGCCGTCATCTGCACTATACGCCGTTTTTTGCAGCGCTCGGCCTGGTTTTTCTGGGCTTTACCGGACTCGGTATCAGTATCTGGCCGATGATTATTCCGCCGGTGATTGACTACAAAATGGCCGCCGCCCCCGGCGAAAGTCTGAGCTTTATGCTGGTTGGCGCTTTATTCATCATACCGGTCATCCTGGTATATACCTGGTGGAGTTATTATGTCTTCAGAGGAAAAATCACCCATGACCAGGGCTATCACTGAACCTGCCGCACCGGCCCCCTGGTGGAAAAAAGCCGCCTGGATGGTCGCTA