Homologs in group_20

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18 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08070 FBDBKF_08070 95.2 Morganella morganii S1 bisC Anaerobic selenocysteine-containing dehydrogenase
FBDBKF_10450 FBDBKF_10450 50.8 Morganella morganii S1 dmsA dimethylsulfoxide reductase subunit A
EHELCC_13900 EHELCC_13900 95.2 Morganella morganii S2 bisC Anaerobic selenocysteine-containing dehydrogenase
EHELCC_14785 EHELCC_14785 50.8 Morganella morganii S2 dmsA dimethylsulfoxide reductase subunit A
NLDBIP_14345 NLDBIP_14345 95.2 Morganella morganii S4 bisC Anaerobic selenocysteine-containing dehydrogenase
NLDBIP_14615 NLDBIP_14615 50.8 Morganella morganii S4 dmsA dimethylsulfoxide reductase subunit A
LHKJJB_08505 LHKJJB_08505 95.2 Morganella morganii S3 bisC Anaerobic selenocysteine-containing dehydrogenase
LHKJJB_14730 LHKJJB_14730 50.8 Morganella morganii S3 dmsA dimethylsulfoxide reductase subunit A
HKOGLL_08055 HKOGLL_08055 95.2 Morganella morganii S5 bisC Anaerobic selenocysteine-containing dehydrogenase
HKOGLL_13350 HKOGLL_13350 50.8 Morganella morganii S5 dmsA dimethylsulfoxide reductase subunit A
F4V73_RS05070 F4V73_RS05070 63.5 Morganella psychrotolerans - DMSO/selenate family reductase complex A subunit
F4V73_RS12925 F4V73_RS12925 90.5 Morganella psychrotolerans - DMSO/selenate family reductase complex A subunit
F4V73_RS14150 F4V73_RS14150 52.4 Morganella psychrotolerans dmsA dimethylsulfoxide reductase subunit A
PMI_RS00825 PMI_RS00825 28.6 Proteus mirabilis HI4320 - molybdopterin-dependent oxidoreductase
PMI_RS05810 PMI_RS05810 63.5 Proteus mirabilis HI4320 - molybdopterin-dependent oxidoreductase
PMI_RS08345 PMI_RS08345 49.2 Proteus mirabilis HI4320 - molybdopterin-dependent oxidoreductase
PMI_RS08900 PMI_RS08900 17.7 Proteus mirabilis HI4320 phsA thiosulfate reductase PhsA
PMI_RS14655 PMI_RS14655 82.5 Proteus mirabilis HI4320 - molybdopterin-dependent oxidoreductase

Distribution of the homologs in the orthogroup group_20

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_20

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P18775 2.93e-17 76 55 0 61 1 dmsA Dimethyl sulfoxide reductase DmsA Escherichia coli (strain K12)
P45004 7.7e-17 75 55 0 61 3 dmsA Dimethyl sulfoxide reductase DmsA Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P77374 1.05e-13 66 50 1 63 1 ynfE Putative dimethyl sulfoxide reductase chain YnfE Escherichia coli (strain K12)
P77783 5.77e-12 61 48 1 64 1 ynfF Probable dimethyl sulfoxide reductase chain YnfF Escherichia coli (strain K12)
P44798 1.95e-05 43 39 2 63 1 torZ Trimethylamine-N-oxide reductase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q52675 8.16e-05 41 37 2 67 1 dorA Dimethyl sulfoxide/trimethylamine N-oxide reductase Rhodobacter capsulatus
Q57366 0.000109 41 32 2 67 1 dmsA Dimethyl sulfoxide/trimethylamine N-oxide reductase Cereibacter sphaeroides
Q8Z2M4 0.000251 40 38 2 62 3 torA Trimethylamine-N-oxide reductase Salmonella typhi
Q8ZKZ7 0.000418 39 38 2 62 3 torA Trimethylamine-N-oxide reductase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P33225 0.000509 39 38 2 62 1 torA Trimethylamine-N-oxide reductase 1 Escherichia coli (strain K12)
Q8CW73 0.000524 39 38 2 62 3 torA Trimethylamine-N-oxide reductase 1 Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

  • Number of RefSeq hits:

General

Source Morganella morganii S3
Locus tag LHKJJB_19940
Feature type CDS
Gene -
Product Anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family
Location 122 - 313 (strand: -1)
Length 192 (nucleotides) / 63 (amino acids)

Contig

Accession ZDB_473
Length 337 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_20
Orthogroup size 19
N. genomes 7

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Genomic region

Domains

PF01568 Molydopterin dinucleotide binding domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0243 Energy production and conversion (C) C Anaerobic selenocysteine-containing dehydrogenase

Protein Sequence

MISVKITPRIMPGVAALQAGAWWQPDSNGIDQGGCANELTSSRSTALAHGNAHQTLLVEVEKA

Flanking regions ( +/- flanking 50bp)

CGCATAACGATCGCGGTATCACCATGATTTCGGTGAAAATCACACCGCGCATTATGCCGGGCGTGGCGGCATTACAGGCCGGCGCCTGGTGGCAGCCGGACAGCAACGGCATTGATCAGGGCGGATGTGCCAACGAGCTCACTTCGTCACGCAGTACCGCGCTCGCCCACGGCAACGCGCACCAGACACTATTAGTTGAGGTGGAAAAAGCATGAGTAAAATCATTGGTGAACCGGCGGTCGGGGAAAAACAGTTAGATTTATAG