Homologs in group_3606

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4 homologs were identified in 4 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_20085 FBDBKF_20085 100.0 Morganella morganii S1 rnlA Type II toxin-antitoxin system RnlA family toxin
EHELCC_19380 EHELCC_19380 100.0 Morganella morganii S2 rnlA Type II toxin-antitoxin system RnlA family toxin
NLDBIP_19510 NLDBIP_19510 100.0 Morganella morganii S4 rnlA Type II toxin-antitoxin system RnlA family toxin
HKOGLL_19390 HKOGLL_19390 100.0 Morganella morganii S5 rnlA Type II toxin-antitoxin system RnlA family toxin

Distribution of the homologs in the orthogroup group_3606

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3606

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P52129 0.0 577 73 0 357 1 rnlA mRNA endoribonuclease toxin LS Escherichia coli (strain K12)
O82881 1.56e-11 68 19 4 278 1 lsoA mRNA endoribonuclease LsoA Escherichia coli O157:H7

  • Number of RefSeq hits:

General

Source Morganella morganii S3
Locus tag LHKJJB_19440
Feature type CDS
Gene rnlA
Product Type II toxin-antitoxin system RnlA family toxin
Location 3182 - 4255 (strand: 1)
Length 1074 (nucleotides) / 357 (amino acids)
In genomic island -

Contig

Accession ZDB_392
Length 12946 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3606
Orthogroup size 5
N. genomes 5

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Genomic region

Domains

PF15935 RNase LS, bacterial toxin
PF19034 RNase LS, bacterial toxin DBD domain
PF19417 RNase LS, bacterial toxin N-terminal

Protein Sequence

MIVRNYRNLNLVRANIETECRQFIQTKTYTVQSIGPMPGQRPGLRVRFAKTGESFATVDIFYNSDGSSTVQYRTGANQSLGKELADHLFETINPAEFEHVNMVVEGFVEDTLIPILELSAEETHIEYREHFRNAHSIVWKITSTTYQDELAVTLHTTTGKLQIQGRPLSCYRVFTFNLAELLNLQGLEKVLIRQDDGKASIVQQEVARANLESIMGDAYAHLHTTTEKLLISGLCVKLAAPELPDYCMLLYPELRAIEGVLKSKMSLFGMSVQQLSGFGPFFDRVGSSFTLKSQFSTSLSSNQVNIVNDAYTFWNKERHAVFHMETVVDTSRMISDMARLMTKATKAWQIIKDLYLV

Flanking regions ( +/- flanking 50bp)

AGGTACAGTATTGTAAAGTTTCCTCTCATCTTTTTTGCGGGAGCTGAGAAATGATAGTCAGAAATTATAGGAATTTAAATCTAGTTAGGGCTAATATTGAAACTGAATGTAGGCAGTTTATTCAAACTAAAACGTATACAGTTCAGTCAATTGGCCCGATGCCGGGGCAAAGGCCCGGACTCAGAGTGAGATTCGCGAAAACAGGAGAGAGCTTCGCTACCGTTGATATTTTCTATAACAGCGATGGTTCGTCTACAGTCCAGTACCGCACAGGAGCTAATCAGTCCTTGGGCAAAGAGCTTGCTGATCACCTTTTTGAAACCATTAATCCTGCAGAATTTGAGCATGTAAATATGGTCGTGGAAGGCTTTGTAGAGGACACACTTATACCAATACTTGAGTTATCAGCAGAAGAAACGCATATTGAGTACAGAGAACACTTTCGTAACGCTCACTCTATCGTGTGGAAAATCACCTCTACTACATACCAGGATGAATTGGCGGTTACCCTGCACACAACAACAGGCAAACTTCAGATTCAGGGCCGCCCGCTATCCTGCTACCGGGTTTTCACCTTCAATCTGGCAGAACTGCTTAATTTGCAAGGTTTGGAGAAAGTATTAATCCGCCAGGATGATGGCAAAGCGAGCATCGTTCAGCAGGAAGTAGCCCGCGCTAACCTAGAGTCCATAATGGGGGATGCTTATGCTCATTTGCACACCACTACCGAAAAATTGCTCATTTCAGGTCTGTGTGTTAAGCTCGCAGCTCCTGAATTGCCAGACTACTGCATGTTGCTCTACCCGGAACTTCGCGCCATTGAAGGTGTCTTAAAGAGCAAGATGTCCTTATTTGGTATGTCTGTACAGCAACTTTCAGGGTTCGGGCCTTTTTTCGATAGGGTTGGTTCAAGTTTCACTTTGAAATCGCAATTTTCGACTTCTCTCAGTTCAAATCAGGTTAATATTGTCAATGATGCCTATACTTTCTGGAATAAGGAACGTCATGCAGTGTTTCACATGGAAACGGTAGTTGATACCAGCCGCATGATTTCAGATATGGCCCGACTAATGACCAAAGCCACTAAAGCGTGGCAAATAATCAAGGATTTGTATCTTGTTTGAAATTACCGGGGTTAACATCTCAGGATCTCTTAAGGCTGTCGTTATGGCGA