Homologs in group_3035

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_18065 FBDBKF_18065 100.0 Morganella morganii S1 vsr G:T-mismatch repair DNA endonuclease Vsr, very short patch repair protein
EHELCC_16765 EHELCC_16765 100.0 Morganella morganii S2 vsr G:T-mismatch repair DNA endonuclease Vsr, very short patch repair protein
NLDBIP_17685 NLDBIP_17685 100.0 Morganella morganii S4 vsr G:T-mismatch repair DNA endonuclease Vsr, very short patch repair protein
HKOGLL_17420 HKOGLL_17420 100.0 Morganella morganii S5 vsr G:T-mismatch repair DNA endonuclease Vsr, very short patch repair protein
F4V73_RS10215 F4V73_RS10215 78.1 Morganella psychrotolerans vsr DNA mismatch endonuclease Vsr

Distribution of the homologs in the orthogroup group_3035

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3035

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P09184 3.65e-47 153 47 0 150 1 vsr DNA mismatch endonuclease Vsr Escherichia coli (strain K12)
Q56829 1.87e-31 112 44 0 113 3 vsr Type II nicking enzyme V.XorIIP Xanthomonas oryzae pv. oryzae (strain KACC10331 / KXO85)
Q9JWD6 2.34e-31 112 41 0 121 3 vsr Type II nicking enzyme V.NmeAIP Neisseria meningitidis serogroup A / serotype 4A (strain DSM 15465 / Z2491)
P50186 2.51e-14 69 39 4 113 3 vsr Type II nicking enzyme V.NaeI Lentzea aerocolonigenes
Q9RLM5 4.57e-11 60 28 3 146 3 vsr Type II nicking enzyme V.NmeDIP Neisseria meningitidis serogroup C
P36434 1.31e-09 56 31 4 135 3 vsr Type II nicking enzyme V.HpaIIP Haemophilus parainfluenzae

  • Number of RefSeq hits:

General

Source Morganella morganii S3
Locus tag LHKJJB_17605
Feature type CDS
Gene vsr
Product G:T-mismatch repair DNA endonuclease Vsr, very short patch repair protein
Location 41130 - 41600 (strand: 1)
Length 471 (nucleotides) / 156 (amino acids)
In genomic island -

Contig

Accession ZDB_379
Length 55765 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3035
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF03852 DNA mismatch endonuclease Vsr

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3727 Replication, recombination and repair (L) L G:T-mismatch repair DNA endonuclease Vsr, very short patch repair protein

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07458 DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] - -

Protein Sequence

MDVHDKETRSRNMRAIRNRDTRPEHHVRKLLHHNGFRFRLYPADLPGKPDIWMAKWRTAIFIHGCFWHMHDCEKFRLPATRTAFWQKKLSENKIRDEKYIAELHRMGLRTLIIWECALTGKTKLSDPMLLTLIKTWLISSAVSGSITDSGLTITPG

Flanking regions ( +/- flanking 50bp)

CGAAATAGGGTAATCTGGGTTTATTCCTGAAATCAGCGGCTGAAAATCCGATGGATGTACATGACAAAGAAACCCGCTCCCGGAATATGCGCGCCATCCGCAACCGGGATACCAGACCGGAGCATCATGTCAGAAAGCTGTTGCATCATAACGGCTTCCGTTTCCGGTTATATCCGGCAGATTTGCCCGGCAAACCCGATATATGGATGGCAAAATGGCGGACGGCTATCTTTATTCACGGCTGTTTCTGGCATATGCACGATTGTGAGAAATTCCGGCTTCCCGCCACACGGACCGCATTCTGGCAGAAAAAATTATCAGAGAATAAAATCCGCGATGAAAAATATATCGCAGAACTGCACCGCATGGGGTTACGCACATTAATCATCTGGGAATGTGCCCTGACCGGGAAAACAAAATTATCTGACCCGATGCTGCTGACATTAATAAAAACCTGGCTGATAAGCAGTGCTGTTTCAGGCAGTATTACGGACTCCGGATTAACTATCACGCCAGGCTGATACCTTATGACACGCACCCAGCGCTTACTCACCTTATTACAGATCCTGAA