Homologs in group_2174

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_16355 FBDBKF_16355 100.0 Morganella morganii S1 trmL tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine (34)-2'-O)-methyltransferase TrmL
EHELCC_16390 EHELCC_16390 100.0 Morganella morganii S2 trmL tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine (34)-2'-O)-methyltransferase TrmL
NLDBIP_16950 NLDBIP_16950 100.0 Morganella morganii S4 trmL tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine (34)-2'-O)-methyltransferase TrmL
HKOGLL_16970 HKOGLL_16970 100.0 Morganella morganii S5 trmL tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine (34)-2'-O)-methyltransferase TrmL
F4V73_RS17220 F4V73_RS17220 97.0 Morganella psychrotolerans trmL tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL
PMI_RS15760 PMI_RS15760 90.4 Proteus mirabilis HI4320 trmL tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL

Distribution of the homologs in the orthogroup group_2174

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2174

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
C7BSD3 1.08e-96 279 78 1 167 3 trmL tRNA (cytidine(34)-2'-O)-methyltransferase Photorhabdus asymbiotica subsp. asymbiotica (strain ATCC 43949 / 3105-77)
Q74Y93 6.33e-93 270 77 1 167 1 trmL tRNA (cytidine(34)-2'-O)-methyltransferase Yersinia pestis
P0AGJ7 7.18e-87 254 72 2 167 1 trmL tRNA (cytidine(34)-2'-O)-methyltransferase Escherichia coli (strain K12)
P0AGJ8 7.18e-87 254 72 2 167 3 trmL tRNA (cytidine(34)-2'-O)-methyltransferase Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P44868 4.93e-80 237 67 1 164 1 trmL tRNA (cytidine(34)-2'-O)-methyltransferase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
A0KEQ6 1.39e-73 220 63 2 164 3 trmL tRNA (cytidine(34)-2'-O)-methyltransferase Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049)
Q21LN7 4.08e-66 201 60 2 163 3 trmL tRNA (cytidine(34)-2'-O)-methyltransferase Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024)
C6X9I5 6.73e-65 198 54 1 164 3 trmL tRNA (cytidine(34)-2'-O)-methyltransferase Methylovorus glucosotrophus (strain SIP3-4)
B8CHC9 1e-63 195 54 1 162 3 trmL tRNA (cytidine(34)-2'-O)-methyltransferase Shewanella piezotolerans (strain WP3 / JCM 13877)
A3NR15 5.27e-62 191 54 1 163 3 trmL tRNA (cytidine(34)-2'-O)-methyltransferase Burkholderia pseudomallei (strain 1106a)
A0KAS4 7.08e-62 191 55 1 163 3 trmL tRNA (cytidine(34)-2'-O)-methyltransferase Burkholderia cenocepacia (strain HI2424)
Q0BBL1 2.6e-61 189 54 1 163 3 trmL tRNA (cytidine(34)-2'-O)-methyltransferase Burkholderia ambifaria (strain ATCC BAA-244 / DSM 16087 / CCUG 44356 / LMG 19182 / AMMD)
Q12E50 4.38e-61 189 57 1 163 3 trmL tRNA (cytidine(34)-2'-O)-methyltransferase Polaromonas sp. (strain JS666 / ATCC BAA-500)
A1WBM9 4.37e-53 169 52 1 157 3 trmL tRNA (cytidine(34)-2'-O)-methyltransferase Acidovorax sp. (strain JS42)
O31590 8.74e-37 127 42 3 162 3 cspR Putative tRNA (cytidine(34)-2'-O)-methyltransferase Bacillus subtilis (strain 168)
P32813 3.22e-36 125 45 5 166 3 None Putative tRNA (cytidine(34)-2'-O)-methyltransferase Geobacillus stearothermophilus
P69001 3.21e-32 116 41 4 167 3 lin0934 Putative tRNA (cytidine(34)-2'-O)-methyltransferase Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)
P74516 3.37e-32 115 40 4 164 3 slr0992 Putative tRNA (cytidine(34)-2'-O)-methyltransferase Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q721N0 6.15e-32 115 40 4 167 3 LMOf2365_0956 Putative tRNA (cytidine(34)-2'-O)-methyltransferase Listeria monocytogenes serotype 4b (strain F2365)
P47588 1.75e-30 111 38 4 167 3 MG346 Putative tRNA (cytidine(34)-2'-O)-methyltransferase Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)
P75257 2.82e-30 110 37 3 163 3 MPN_521 Putative tRNA (cytidine(34)-2'-O)-methyltransferase Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1)
Q042B4 3.01e-30 111 39 3 157 3 LGAS_1346 Putative RNA (cytidine(34)-2'-O)-methyltransferase Lactobacillus gasseri (strain ATCC 33323 / DSM 20243 / BCRC 14619 / CIP 102991 / JCM 1131 / KCTC 3163 / NCIMB 11718 / NCTC 13722 / AM63)
A2RKW7 7.5e-29 107 39 4 169 3 llmg_1343 Putative tRNA (cytidine(34)-2'-O)-methyltransferase Lactococcus lactis subsp. cremoris (strain MG1363)
Q48V41 8.29e-28 105 35 4 167 3 M28_Spy0301 Putative tRNA (cytidine(34)-2'-O)-methyltransferase Streptococcus pyogenes serotype M28 (strain MGAS6180)
B2IBT9 4.42e-26 100 33 3 163 3 trmL tRNA (cytidine(34)-2'-O)-methyltransferase Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIMB 8712)
D7A3L6 8.69e-25 96 33 2 156 3 trmL tRNA (cytidine(34)-2'-O)-methyltransferase Ancylobacter novellus (strain ATCC 8093 / DSM 506 / JCM 20403 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIMB 10456)
P0AGJ4 6.23e-06 48 25 6 178 3 trmH tRNA (guanosine(18)-2'-O)-methyltransferase Shigella flexneri
P0AGJ2 6.23e-06 48 25 6 178 1 trmH tRNA (guanosine(18)-2'-O)-methyltransferase Escherichia coli (strain K12)
P0AGJ3 6.23e-06 48 25 6 178 3 trmH tRNA (guanosine(18)-2'-O)-methyltransferase Escherichia coli O157:H7
Q5SM16 2.74e-05 45 27 6 166 1 trmH tRNA (guanosine(18)-2'-O)-methyltransferase Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
Q72GI1 2.74e-05 45 27 6 166 1 trmH tRNA (guanosine(18)-2'-O)-methyltransferase Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27)

  • Number of RefSeq hits:

General

Source Morganella morganii S3
Locus tag LHKJJB_16870
Feature type CDS
Gene trmL
Product tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine (34)-2'-O)-methyltransferase TrmL
Location 6205 - 6708 (strand: 1)
Length 504 (nucleotides) / 167 (amino acids)

Contig

Accession ZDB_377
Length 65271 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2174
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00588 SpoU rRNA Methylase family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0219 Translation, ribosomal structure and biogenesis (J) J tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03216 tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207] - -

Protein Sequence

MLNIVLFEPEIPPNTGNIIRLCANTGFRLHLIHPLGFTWDDKRLRRAGLDYSEFADIKHHHDYYAFLDSEGLSSDNAQSPTGNRVFALTTKGTPRHSNVSYQAGDYLLFGPETRGLPPYVLDNMPVDQKIRVPMLPDSRSMNLSNTVAVIVFEAWRQLDYAGALLRD

Flanking regions ( +/- flanking 50bp)

TAACACCATGTTTTATTTGATAAACTATTGCCCCTTAAGAGAGGGGTAATATGCTCAACATCGTCTTATTCGAACCAGAAATACCACCTAACACCGGCAATATCATCCGGTTATGTGCCAATACCGGCTTTCGGCTGCATCTTATCCATCCGCTGGGGTTTACCTGGGATGATAAGCGTCTGCGCCGGGCCGGGCTGGATTACAGTGAGTTTGCGGATATCAAACATCATCATGATTATTACGCCTTTCTCGACAGCGAGGGGCTGAGTTCTGATAATGCGCAGTCGCCAACCGGTAACCGGGTGTTTGCACTGACCACTAAGGGCACACCTCGTCACAGTAATGTCAGCTATCAGGCCGGTGATTATCTGCTGTTCGGGCCGGAGACTCGTGGGTTGCCGCCTTATGTGCTGGATAATATGCCGGTTGATCAGAAAATCCGCGTGCCGATGCTGCCGGACAGCCGCAGTATGAATTTATCCAATACCGTTGCAGTAATTGTATTTGAAGCCTGGCGGCAGCTGGATTATGCAGGGGCGTTATTGCGGGATTAATGTGTTCTGTATTTCAGTCACAAAAAAGACAGCCTTGGCTGTCTTTTTTA