Homologs in group_3256

Help

4 homologs were identified in 4 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_05870 FBDBKF_05870 100.0 Morganella morganii S1 - Anaerobic benzoate catabolism transcriptional regulator
EHELCC_11720 EHELCC_11720 100.0 Morganella morganii S2 - Anaerobic benzoate catabolism transcriptional regulator
NLDBIP_12060 NLDBIP_12060 100.0 Morganella morganii S4 - Anaerobic benzoate catabolism transcriptional regulator
HKOGLL_10535 HKOGLL_10535 100.0 Morganella morganii S5 - Anaerobic benzoate catabolism transcriptional regulator

Distribution of the homologs in the orthogroup group_3256

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_3256

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P15017 6.26e-06 44 30 0 72 4 None Uncharacterized transcriptional regulator in ATPase CF(0) region Rhodospirillum rubrum
P0C5S2 1.17e-05 43 30 0 68 4 R00410 Uncharacterized HTH-type transcriptional regulator R00410 Rhizobium meliloti (strain 1021)
A6U5H5 1.17e-05 43 30 0 68 4 Smed_0045 Uncharacterized HTH-type transcriptional regulator Smed_0045 Sinorhizobium medicae (strain WSM419)
Q9ZD50 4.57e-05 42 30 0 66 4 RP497 Uncharacterized HTH-type transcriptional regulator RP497 Rickettsia prowazekii (strain Madrid E)
Q92HV3 4.72e-05 42 30 0 66 4 RC0668 Uncharacterized HTH-type transcriptional regulator RC0668 Rickettsia conorii (strain ATCC VR-613 / Malish 7)

  • Number of RefSeq hits:

General

Source Morganella morganii S3
Locus tag LHKJJB_11920
Feature type CDS
Gene -
Product Anaerobic benzoate catabolism transcriptional regulator
Location 689 - 970 (strand: -1)
Length 282 (nucleotides) / 93 (amino acids)
In genomic island -

Contig

Accession ZDB_369
Length 181491 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3256
Orthogroup size 5
N. genomes 5

Actions

Genomic region

Domains

PF01381 Helix-turn-helix

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1396 Transcription (K) K Transcriptional regulator, contains XRE-family HTH domain

Protein Sequence

MTNTKNSVDINIGCKIKDARISAGMSGNDLAIKIDVSQQQVSRYESGQTPMTINTVIMIAHVLNVSVNELLSDYLSSEYSDIMLLMSNRNTEK

Flanking regions ( +/- flanking 50bp)

CAGAAAAGGAGATTATAATAAATAAAATTATCTATCTGATCTCTATAACAATGACGAATACAAAAAACAGCGTGGACATCAACATAGGTTGTAAAATTAAAGACGCGCGAATATCTGCCGGAATGTCCGGGAATGACCTTGCCATAAAGATTGATGTCTCACAGCAACAGGTATCACGTTATGAATCCGGGCAAACGCCAATGACCATAAACACGGTTATAATGATTGCTCATGTGCTTAATGTCTCTGTAAATGAGTTACTGAGTGATTACCTTTCCTCAGAGTACAGTGACATCATGCTTTTAATGAGCAATCGTAATACAGAAAAATAGTCACACCGGACGTCCACCAGCGCGGCTTTGTTTTATTGATCTGAGTCTAC