Homologs in group_3447

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4 homologs were identified in 4 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_14965 FBDBKF_14965 100.0 Morganella morganii S1 kdgM Oligogalacturonate-specific porin kdgM
EHELCC_11280 EHELCC_11280 100.0 Morganella morganii S2 kdgM Oligogalacturonate-specific porin kdgM
NLDBIP_11625 NLDBIP_11625 100.0 Morganella morganii S4 kdgM Oligogalacturonate-specific porin kdgM
HKOGLL_10095 HKOGLL_10095 100.0 Morganella morganii S5 kdgM Oligogalacturonate-specific porin kdgM

Distribution of the homologs in the orthogroup group_3447

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3447

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0A1U8 1.95e-45 154 39 5 213 3 yiiY Uncharacterized protein YiiY Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A1U9 1.95e-45 154 39 5 213 3 yiiY Uncharacterized protein YiiY Salmonella typhi
Q934G3 1.02e-33 124 32 4 234 1 kdgM Oligogalacturonate-specific porin KdgM Dickeya dadantii (strain 3937)
Q8CVG4 1.19e-09 60 23 7 239 3 nanC N-acetylneuraminic acid outer membrane channel protein NanC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P69858 1.42e-09 59 23 7 239 3 nanC N-acetylneuraminic acid outer membrane channel protein NanC Shigella flexneri
P69856 1.42e-09 59 23 7 239 1 nanC N-acetylneuraminic acid outer membrane channel protein NanC Escherichia coli (strain K12)
P69857 1.42e-09 59 23 7 239 3 nanC N-acetylneuraminic acid outer membrane channel protein NanC Escherichia coli O157:H7

  • Number of RefSeq hits:

General

Source Morganella morganii S3
Locus tag LHKJJB_11485
Feature type CDS
Gene kdgM
Product Oligogalacturonate-specific porin kdgM
Location 78089 - 78778 (strand: 1)
Length 690 (nucleotides) / 229 (amino acids)

Contig

Accession ZDB_368
Length 188522 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3447
Orthogroup size 5
N. genomes 5

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Genomic region

Domains

PF06178 Oligogalacturonate-specific porin protein (KdgM)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K22110 oligogalacturonate-specific porin family protein - -

Protein Sequence

MLNNKILLACCTFFISFQLNATTLDFRHEYSDSSRINKDRIAFIHSFSNGIGFYIDASIKSGGVDGEKGKVFSDVVNNAIEMGLSYNHKINNNITLQPGLIFETVTDTSIYKPYLKAQYNFDNGLYVAGRYRFDYARKTKQGVDDEKTNRFDTFIGYKYSKYKVEYDYTQMYSDAIKYDNKKRNYEHNVSFSYQLNDIFTPYIEVGNVAVRPTSDARQTRYRLGLQFHF

Flanking regions ( +/- flanking 50bp)

CAAGAACTCCATATTAAATTTATGGCATCCTATCCACTCAGGTAAAAATTATGCTTAATAATAAAATCTTGCTGGCATGTTGTACTTTTTTTATATCATTTCAATTAAATGCGACTACACTAGACTTTCGTCATGAATATTCAGATTCATCGAGAATAAATAAAGACCGCATTGCGTTTATTCATTCATTTTCAAATGGCATAGGTTTTTATATTGATGCCAGTATAAAATCAGGTGGTGTTGATGGTGAAAAAGGTAAAGTATTTAGTGATGTTGTTAATAATGCCATCGAAATGGGGCTGAGTTACAATCATAAGATAAATAATAATATAACGTTACAACCAGGCTTAATATTCGAAACAGTTACGGACACATCAATTTACAAACCTTATTTAAAGGCACAATATAATTTTGATAATGGTTTATATGTTGCTGGTCGTTATCGTTTTGATTATGCCAGAAAAACAAAACAAGGTGTTGACGACGAGAAAACAAATCGCTTTGATACTTTTATTGGTTATAAATATAGTAAATACAAAGTTGAATATGACTATACACAAATGTATAGCGATGCTATAAAATATGATAATAAGAAACGTAATTATGAACATAATGTCTCTTTTTCTTACCAATTGAATGACATATTTACTCCTTATATTGAAGTTGGAAATGTTGCAGTAAGACCGACCAGTGACGCCCGTCAAACCCGGTATCGCTTAGGATTACAATTCCACTTTTAAGTCCTCTATAACATAATGCCAAACCTTGTAGTGAATAATCACCCCATTAT