Homologs in group_741

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_03295 FBDBKF_03295 100.0 Morganella morganii S1 pmbA metalloprotease PmbA
EHELCC_07240 EHELCC_07240 100.0 Morganella morganii S2 pmbA metalloprotease PmbA
NLDBIP_07565 NLDBIP_07565 100.0 Morganella morganii S4 pmbA metalloprotease PmbA
HKOGLL_03830 HKOGLL_03830 100.0 Morganella morganii S5 pmbA metalloprotease PmbA
F4V73_RS11640 F4V73_RS11640 94.8 Morganella psychrotolerans pmbA metalloprotease PmbA
PMI_RS18120 PMI_RS18120 73.8 Proteus mirabilis HI4320 pmbA metalloprotease PmbA

Distribution of the homologs in the orthogroup group_741

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_741

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AFK0 0.0 738 78 0 446 1 pmbA Metalloprotease PmbA Escherichia coli (strain K12)
P0AFK1 0.0 738 78 0 446 3 pmbA Metalloprotease PmbA Escherichia coli O157:H7
P45077 0.0 538 59 1 445 3 pmbA Metalloprotease PmbA homolog Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q8KA30 1.39e-167 481 50 1 447 3 pmbA Metalloprotease PmbA homolog Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P57191 5.22e-152 442 47 0 446 3 pmbA Metalloprotease PmbA homolog Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q89AY6 9.61e-143 418 45 2 443 3 pmbA Metalloprotease PmbA homolog Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
Q58403 2.77e-15 81 22 10 412 3 MJ0996 Metalloprotease MJ0996 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
O26944 8.35e-15 79 24 9 320 3 MTH_856 Metalloprotease MTH_856 Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
P57478 6.03e-13 73 21 10 397 3 tldD Metalloprotease TldD homolog Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
P74002 2.76e-11 68 26 9 263 3 slr1322 Metalloprotease slr1322 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
O29602 3.93e-11 68 27 6 183 3 AF_0655 Metalloprotease AF_0655 Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
Q57684 1.11e-09 63 26 8 234 4 MJ0231 Uncharacterized protein MJ0231 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P45297 1.67e-09 63 20 9 411 3 tldD Metalloprotease TldD homolog Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P73754 2.21e-09 62 24 16 425 3 slr0863 Metalloprotease slr0863 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P0AGH0 5.5e-09 61 20 9 408 3 tldD Metalloprotease TldD homolog Shigella flexneri
P0AGG8 5.5e-09 61 20 9 408 1 tldD Metalloprotease TldD Escherichia coli (strain K12)
P0AGG9 5.5e-09 61 20 9 408 3 tldD Metalloprotease TldD Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q7LXP6 1.4e-08 60 26 7 213 1 tldD Zinc metalloprotease TldD homolog Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
Q8K9F2 5.02e-06 52 19 11 418 3 tldD Metalloprotease TldD homolog Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)

  • Number of RefSeq hits:

General

Source Morganella morganii S3
Locus tag LHKJJB_07100
Feature type CDS
Gene pmbA
Product metalloprotease PmbA
Location 150875 - 152215 (strand: 1)
Length 1341 (nucleotides) / 446 (amino acids)

Contig

Accession ZDB_363
Length 233386 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_741
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01523 PmbA/TldA metallopeptidase domain 1
PF19289 PmbA/TldA metallopeptidase C-terminal domain
PF19290 PmbA/TldA metallopeptidase central domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0312 General function prediction only (R) R Zn-dependent protease PmbA/TldA or its inactivated homolog

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03592 PmbA protein - -

Protein Sequence

MNITSQIMAQRTRLEQAVSQALSIAQKGCDSAEVAVSRTTGMSVSTRMGEVENVEFNSDGALGITVYHNQRKGSASSTDLSEEAIARTVQAAIDIAKYTSEDPCSGPADRDLLAFEAPDLQLFYPSEVSADQAIDYAANAEKAALSADPRITNTEGGSFNSHYGIRVFGNTLGMLQSYCSSRHSMSACVIAEENGDMERDYAYTIARKLDDLKSAQWVGEECARRTLSRLAPRKLATQKAPVIFAPEVATGLFGHLVGAISGTSVYRKSTFLLDSLGKQILPDWLTIRELPHVIGGLASTPFDSEGVRTEDRLIIENGVLNNWLMTTYAARKLGLKSTGHAGGIHNWHIAGQGLGFDDMLREMGTGLVVTELMGQGVSGITGDYSRGASGFWVENGEIQYPVSEITIAGNLKDMWASIIATGDDIETRSNIQCGSVWLPEMSIAGQ

Flanking regions ( +/- flanking 50bp)

CTCTCTGATTAGCTGACGGCCCCTTAATTTATTGAATTGGAACCTGATTGATGAATATCACTTCTCAGATTATGGCGCAGCGTACGCGCCTGGAACAAGCGGTTTCGCAGGCACTGAGTATTGCACAGAAAGGGTGTGACAGCGCCGAAGTTGCTGTCAGCAGAACCACCGGGATGAGTGTGAGCACCCGTATGGGTGAGGTGGAGAATGTCGAGTTTAACAGTGACGGCGCACTGGGGATCACGGTATATCATAACCAGCGCAAAGGCAGTGCATCCTCCACAGATTTAAGCGAAGAGGCGATTGCCCGTACCGTACAGGCAGCGATCGACATTGCGAAATATACATCTGAAGATCCGTGTTCGGGCCCGGCAGATCGCGATTTACTGGCTTTCGAGGCTCCGGATTTACAACTGTTTTATCCGTCCGAAGTGAGCGCTGACCAGGCTATCGACTATGCCGCCAATGCGGAAAAAGCCGCACTGAGTGCCGACCCGCGCATCACCAACACAGAAGGCGGCAGCTTTAACAGCCATTACGGCATCCGTGTGTTTGGTAACACGCTGGGTATGCTGCAAAGCTACTGCAGCAGCCGTCACTCCATGTCCGCTTGTGTGATCGCGGAAGAAAACGGCGATATGGAGCGTGATTACGCCTATACCATCGCACGTAAACTGGATGACCTGAAATCCGCACAGTGGGTGGGTGAAGAGTGTGCCCGCCGGACACTGTCCCGCCTCGCACCGCGCAAACTGGCAACACAGAAAGCGCCTGTGATTTTTGCCCCGGAAGTGGCAACCGGTTTGTTCGGGCATCTGGTCGGCGCGATCAGCGGCACCTCCGTGTACCGCAAATCCACCTTCCTGCTCGACAGCCTCGGTAAACAGATCCTGCCGGACTGGCTGACTATCCGCGAACTGCCGCATGTGATCGGCGGACTGGCCTCCACCCCGTTTGACAGCGAAGGGGTCCGGACAGAAGATCGCCTGATTATCGAAAACGGTGTGCTGAACAACTGGCTGATGACCACCTACGCCGCCCGTAAACTGGGGCTGAAGAGCACCGGCCATGCAGGCGGGATCCACAACTGGCACATTGCCGGTCAGGGGCTGGGATTTGACGACATGCTCCGGGAAATGGGCACCGGTCTGGTGGTTACCGAACTGATGGGACAGGGTGTCAGCGGTATTACCGGTGATTACTCCCGCGGCGCATCCGGTTTCTGGGTGGAAAACGGCGAGATTCAGTATCCGGTCAGTGAAATCACCATTGCCGGAAACCTGAAAGACATGTGGGCCAGCATTATCGCCACCGGCGACGATATTGAAACCCGCAGCAACATTCAGTGCGGCTCAGTCTGGCTGCCGGAAATGAGTATTGCGGGGCAGTAAGTGTGTCACTCCCGGAGCCGGAGTATCCGCCTCCGGGAGTGAAAATGCAG