Homologs in group_2611

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_03505 FBDBKF_03505 100.0 Morganella morganii S1 cdaR Sugar diacid utilization regulator CdaR
EHELCC_07030 EHELCC_07030 100.0 Morganella morganii S2 cdaR Sugar diacid utilization regulator CdaR
NLDBIP_07355 NLDBIP_07355 100.0 Morganella morganii S4 cdaR Sugar diacid utilization regulator CdaR
HKOGLL_04040 HKOGLL_04040 100.0 Morganella morganii S5 cdaR Sugar diacid utilization regulator CdaR
F4V73_RS11395 F4V73_RS11395 90.3 Morganella psychrotolerans - sugar diacid recognition domain-containing protein

Distribution of the homologs in the orthogroup group_2611

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2611

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P44509 1.21e-80 254 39 6 376 3 HI_0093 Uncharacterized protein HI_0093 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P37047 1.78e-68 223 34 5 388 1 cdaR Carbohydrate diacid regulator Escherichia coli (strain K12)
P94536 1.64e-35 136 26 7 375 3 ysfB Uncharacterized protein YsfB Bacillus subtilis (strain 168)
P71073 2.66e-09 62 25 4 176 1 adeR DNA-binding transcriptional activator AdeR Bacillus subtilis (strain 168)
O32138 5.63e-05 48 35 0 57 2 pucR Purine catabolism regulatory protein Bacillus subtilis (strain 168)
P94393 0.000563 45 26 4 138 1 putR Proline-responsive transcriptional activator PutR Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Morganella morganii S3
Locus tag LHKJJB_06890
Feature type CDS
Gene cdaR
Product Sugar diacid utilization regulator CdaR
Location 103487 - 104608 (strand: 1)
Length 1122 (nucleotides) / 373 (amino acids)

Contig

Accession ZDB_363
Length 233386 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2611
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF05651 Putative sugar diacid recognition
PF13556 PucR C-terminal helix-turn-helix domain
PF17853 GGDEF-like domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3835 Transcription (K)
Signal transduction mechanisms (T)		 KT Sugar diacid utilization regulator CdaR

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02647 carbohydrate diacid regulator - -

Protein Sequence

MTPVQLDQRTARLIVQRAMQILSYSVNVMNAQGVIIASGDPQRVNQRHEGAVLALTENRIVEIDEATAATLKGVKPGINLPVIFRDTMVGVVGISGKPDEVRNYAELVRMAAELVLEQADLLEKSQWDRRYRDELVSQLISPEQQPQSVKSIAAYLGISPDKPRIALILALPAPDHEQFHRLVDYIDNLKMDLLVSIRGINSLVVLKPVACDADFQPLFPVQKQLQALRRQLPDLLMYVGGFFHGHNGLHRSWQSACAVQQLGQTPAYSRQKTIFYDEVKLPALLQGFQDSWQAAELASAWQKLKAADSRRVLCHTLKTYFDQNCDLSQTTKTLHIHTNTLRYRLQRVESITGLNINRLESMIQLYFGILTDL

Flanking regions ( +/- flanking 50bp)

CATTGAGTCTGCCATTGCGGCAGCACGCCAGGCACAGAATCCGTCCTGATATGACACCGGTTCAGCTTGATCAGCGCACCGCCCGGCTGATTGTTCAGCGGGCGATGCAAATCCTCAGTTACTCCGTGAATGTGATGAATGCGCAGGGAGTGATTATTGCGTCCGGTGACCCGCAGCGGGTCAATCAGCGTCACGAGGGCGCGGTGCTGGCGCTGACAGAAAACCGGATTGTGGAAATTGATGAGGCCACCGCTGCCACGCTGAAAGGCGTGAAACCGGGTATTAATCTGCCGGTGATTTTTCGCGATACCATGGTGGGTGTGGTCGGAATTTCCGGCAAACCGGATGAAGTGCGCAATTACGCCGAACTGGTGCGCATGGCGGCCGAATTAGTGCTGGAGCAGGCCGATCTGCTGGAAAAATCCCAGTGGGATCGCCGTTACCGTGATGAGCTGGTCAGCCAGCTGATAAGCCCGGAGCAGCAGCCGCAGTCAGTAAAATCCATCGCCGCCTATCTCGGGATCTCCCCCGATAAACCCCGTATTGCCCTGATCCTCGCACTGCCAGCGCCTGATCACGAGCAGTTTCACCGTCTGGTGGACTATATTGATAATCTGAAAATGGATCTGCTGGTCAGTATCCGGGGAATAAATTCCCTGGTGGTACTGAAACCGGTGGCCTGTGATGCGGATTTTCAGCCGCTCTTTCCGGTGCAGAAGCAGTTACAGGCACTGCGCCGCCAGCTGCCGGATCTGCTGATGTATGTCGGCGGTTTTTTTCACGGACACAATGGCCTGCACCGCTCCTGGCAGAGTGCCTGCGCTGTGCAGCAACTGGGGCAGACCCCGGCGTACAGCCGCCAGAAAACCATTTTTTATGATGAAGTCAAATTACCCGCGCTGTTACAGGGATTTCAGGATAGCTGGCAGGCCGCTGAACTGGCTTCTGCCTGGCAGAAACTGAAAGCGGCGGACAGCCGCCGTGTGTTGTGTCATACCCTGAAGACCTATTTTGATCAGAATTGTGATCTGTCTCAAACCACAAAAACGCTGCATATTCACACAAATACCCTCCGTTACCGCCTTCAGCGTGTTGAATCGATTACTGGATTAAATATCAATAGATTAGAATCAATGATTCAGCTTTATTTCGGTATTCTGACTGATCTGTGATTTGTACGTTTGTACAAAATACGCGGTTTCAGCCCGTTCTTTTTTGTCGG