Homologs in group_3220

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4 homologs were identified in 4 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_02920 FBDBKF_02920 100.0 Morganella morganii S1 alkB DNA oxidative demethylase AlkB
EHELCC_03390 EHELCC_03390 100.0 Morganella morganii S2 alkB DNA oxidative demethylase AlkB
NLDBIP_00070 NLDBIP_00070 100.0 Morganella morganii S4 alkB DNA oxidative demethylase AlkB
HKOGLL_02005 HKOGLL_02005 100.0 Morganella morganii S5 alkB DNA oxidative demethylase AlkB

Distribution of the homologs in the orthogroup group_3220

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3220

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P05050 1.25e-79 239 56 1 212 1 alkB Alpha-ketoglutarate-dependent dioxygenase AlkB Escherichia coli (strain K12)
P37462 1.25e-77 234 54 1 212 3 alkB Alpha-ketoglutarate-dependent dioxygenase AlkB Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
B8GWW6 7.7e-38 133 41 3 205 3 alkB Alpha-ketoglutarate-dependent dioxygenase AlkB homolog Caulobacter vibrioides (strain NA1000 / CB15N)
P0CAT7 7.7e-38 133 41 3 205 3 alkB Alpha-ketoglutarate-dependent dioxygenase AlkB homolog Caulobacter vibrioides (strain ATCC 19089 / CIP 103742 / CB 15)
Q9LJH2 1.16e-22 97 30 6 226 1 ALKBH1C DNA N(6)-methyladenine demethylase ALKBH1C Arabidopsis thaliana
F4KAV2 6.23e-17 81 29 8 227 1 ALKBH1D DNA N(6)-methyladenine demethylase ALKBH1D Arabidopsis thaliana
P0CB42 1.68e-13 71 32 2 122 1 Alkbh1 Nucleic acid dioxygenase ALKBH1 Mus musculus
Q13686 3.07e-12 68 31 2 122 1 ALKBH1 Nucleic acid dioxygenase ALKBH1 Homo sapiens
F4JFR7 5.07e-12 67 25 6 229 2 ALKBH1B Probable DNA N(6)-methyladenine demethylase ALKBH1B Arabidopsis thaliana
O60066 2.29e-09 59 27 1 122 2 abh1 Alpha-ketoglutarate-dependent dioxygenase abh1 Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q54N08 2.22e-08 56 29 1 119 2 alkB Alpha-ketoglutarate-dependent dioxygenase alkB Dictyostelium discoideum
Q9SA98 3.09e-08 56 31 1 110 1 ALKBH1A DNA N(6)-methyladenine demethylase ALKBH1A Arabidopsis thaliana

  • Number of RefSeq hits:

General

Source Morganella morganii S3
Locus tag LHKJJB_01965
Feature type CDS
Gene alkB
Product DNA oxidative demethylase AlkB
Location 378263 - 378898 (strand: -1)
Length 636 (nucleotides) / 211 (amino acids)
In genomic island -

Contig

Accession ZDB_359
Length 392768 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3220
Orthogroup size 5
N. genomes 5

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Genomic region

Domains

PF13532 2OG-Fe(II) oxygenase superfamily

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3145 Replication, recombination and repair (L) L Alkylated DNA repair dioxygenase AlkB

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03919 DNA oxidative demethylase [EC:1.14.11.33] - -

Protein Sequence

MSDLFAHDEPLAVAPDAYLLKGFLSDEDEMLLAEIRRLTAISPFRHMQTPGGYRMSAAMSSCGTYGWVSDAKGYRYSPTDPLTGNPWPPLPDAFLLLSQQAAERAGFHGFSPDSCLINCYAPGAGMSLHQDKDEPDRRQPIVSFSLGLPVQFQFGGSERHHPLKTFALEHGDVLVWGGRSRLNYHAVRPVRAGVHPLAGARRFNLTFRCAR

Flanking regions ( +/- flanking 50bp)

CTGCAATACTGTCATCACCGGAAAGACACAGGAAACAGGACGGAGGCGTTATGTCAGATCTCTTTGCTCACGATGAACCGCTTGCAGTGGCACCCGATGCGTATCTGCTCAAAGGTTTTCTCAGTGATGAGGATGAGATGCTGCTGGCGGAAATCCGCCGCCTGACCGCCATTTCGCCGTTCCGCCATATGCAGACGCCCGGCGGATACCGGATGTCTGCGGCCATGAGCAGCTGCGGCACATACGGCTGGGTCTCCGATGCCAAAGGTTACCGCTACTCCCCGACTGATCCGCTGACCGGCAATCCGTGGCCGCCGCTGCCGGACGCATTTTTGTTGCTGTCGCAGCAGGCTGCGGAGCGGGCGGGCTTTCACGGGTTTTCGCCGGACAGCTGTCTGATTAACTGTTACGCGCCGGGCGCCGGTATGTCTCTGCATCAGGACAAGGATGAGCCGGATCGCCGCCAGCCGATTGTGTCATTTTCACTCGGTCTGCCGGTGCAGTTTCAGTTCGGCGGCAGTGAGCGCCATCATCCCCTGAAAACCTTTGCGCTTGAGCACGGCGATGTACTGGTATGGGGCGGCCGTTCCCGTCTGAATTACCATGCTGTCCGTCCGGTAAGGGCCGGGGTGCATCCGCTTGCGGGTGCCCGGCGGTTTAATCTGACCTTCCGCTGCGCGCGGTAACGGAGAAACAGGATGACAAAACAGACAATACTCTCAGACGATGCGTGCTG