Homologs in group_3241

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4 homologs were identified in 4 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_04815 FBDBKF_04815 100.0 Morganella morganii S1 psuG Pseudouridine-5'-phosphate glycosidase (pseudoU degradation)
EHELCC_06105 EHELCC_06105 100.0 Morganella morganii S2 psuG Pseudouridine-5'-phosphate glycosidase (pseudoU degradation)
NLDBIP_06425 NLDBIP_06425 100.0 Morganella morganii S4 psuG Pseudouridine-5'-phosphate glycosidase (pseudoU degradation)
LHKJJB_03305 LHKJJB_03305 100.0 Morganella morganii S3 psuG Pseudouridine-5'-phosphate glycosidase (pseudoU degradation)

Distribution of the homologs in the orthogroup group_3241

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3241

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q7MZE1 1.33e-166 468 72 0 309 3 psuG2 Pseudouridine-5'-phosphate glycosidase 2 Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
P33025 4.28e-164 461 71 0 310 1 psuG Pseudouridine-5'-phosphate glycosidase Escherichia coli (strain K12)
Q2SM69 6.26e-148 420 69 1 302 3 psuG Pseudouridine-5'-phosphate glycosidase Hahella chejuensis (strain KCTC 2396)
A7GCK7 5.16e-144 410 64 0 302 3 psuG Pseudouridine-5'-phosphate glycosidase Clostridium botulinum (strain Langeland / NCTC 10281 / Type F)
Q5L078 2.98e-132 380 66 1 285 3 psuG Pseudouridine-5'-phosphate glycosidase Geobacillus kaustophilus (strain HTA426)
A9BJN0 1.74e-130 376 59 1 301 3 psuG Pseudouridine-5'-phosphate glycosidase Petrotoga mobilis (strain DSM 10674 / SJ95)
A6TL60 3.21e-130 375 60 1 302 3 psuG Pseudouridine-5'-phosphate glycosidase Alkaliphilus metalliredigens (strain QYMF)
B1HV79 5.38e-128 370 61 1 302 3 psuG Pseudouridine-5'-phosphate glycosidase Lysinibacillus sphaericus (strain C3-41)
C0QZV6 1.57e-126 366 57 1 302 3 psuG Pseudouridine-5'-phosphate glycosidase Brachyspira hyodysenteriae (strain ATCC 49526 / WA1)
C0ZIY1 1.05e-123 359 59 1 301 3 psuG Pseudouridine-5'-phosphate glycosidase Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599)
B8F668 7.04e-122 354 59 1 298 3 psuG Pseudouridine-5'-phosphate glycosidase Glaesserella parasuis serovar 5 (strain SH0165)
Q8NYD0 1.56e-121 353 59 1 302 3 psuG Pseudouridine-5'-phosphate glycosidase Staphylococcus aureus (strain MW2)
Q8RCT3 3.07e-120 350 58 1 301 3 psuG Pseudouridine-5'-phosphate glycosidase Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4)
Q01RY8 4.8e-115 337 56 1 299 3 psuG Pseudouridine-5'-phosphate glycosidase Solibacter usitatus (strain Ellin6076)
Q1M4T3 9.88e-115 336 57 1 298 3 psuG2 Pseudouridine-5'-phosphate glycosidase 2 Rhizobium johnstonii (strain DSM 114642 / LMG 32736 / 3841)
A5IXG3 5.09e-114 334 56 2 297 3 psuG Pseudouridine-5'-phosphate glycosidase Mycoplasmopsis agalactiae (strain NCTC 10123 / CIP 59.7 / PG2)
Q9RS16 7.16e-114 334 57 1 287 3 psuG Pseudouridine-5'-phosphate glycosidase Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
B6IRJ4 6.97e-112 329 58 1 302 3 psuG Pseudouridine-5'-phosphate glycosidase Rhodospirillum centenum (strain ATCC 51521 / SW)
A9NGD7 2.07e-109 323 51 1 302 3 psuG Pseudouridine-5'-phosphate glycosidase Acholeplasma laidlawii (strain PG-8A)
Q46PS3 7.31e-109 322 57 1 297 3 psuG Pseudouridine-5'-phosphate glycosidase Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197)
Q98NQ8 3.03e-108 320 57 1 297 3 psuG Pseudouridine-5'-phosphate glycosidase Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099)
A1SQN1 3.38e-106 315 54 1 300 3 psuG Pseudouridine-5'-phosphate glycosidase Nocardioides sp. (strain ATCC BAA-499 / JS614)
A1B316 3.8e-106 314 55 1 285 3 psuG Pseudouridine-5'-phosphate glycosidase Paracoccus denitrificans (strain Pd 1222)
A8LQI0 1.04e-104 311 54 1 300 3 psuG Pseudouridine-5'-phosphate glycosidase Dinoroseobacter shibae (strain DSM 16493 / NCIMB 14021 / DFL 12)
Q28PY7 1.15e-101 303 54 1 297 3 psuG Pseudouridine-5'-phosphate glycosidase Jannaschia sp. (strain CCS1)
Q5ZU79 2.19e-101 302 51 2 301 3 psuG Pseudouridine-5'-phosphate glycosidase Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513)
C6CFY1 5.86e-99 296 47 1 307 3 psuG Pseudouridine-5'-phosphate glycosidase Dickeya chrysanthemi (strain Ech1591)
Q67N11 4.22e-96 289 51 2 302 3 psuG Pseudouridine-5'-phosphate glycosidase Symbiobacterium thermophilum (strain DSM 24528 / JCM 14929 / IAM 14863 / T)
B8II14 8.11e-96 289 56 1 286 3 psuG Pseudouridine-5'-phosphate glycosidase Methylobacterium nodulans (strain LMG 21967 / CNCM I-2342 / ORS 2060)
Q84K35 5.12e-95 287 50 0 300 1 PUMY Pseudouridine-5'-phosphate glycosidase Arabidopsis thaliana
A9GT78 1.92e-94 285 53 1 288 3 psuG Pseudouridine-5'-phosphate glycosidase Sorangium cellulosum (strain So ce56)
Q1MFZ6 7.82e-94 283 53 1 293 3 psuG1 Pseudouridine-5'-phosphate glycosidase 1 Rhizobium johnstonii (strain DSM 114642 / LMG 32736 / 3841)
Q165S4 3.68e-93 281 53 1 282 3 psuG Pseudouridine-5'-phosphate glycosidase Roseobacter denitrificans (strain ATCC 33942 / OCh 114)
C5CDZ1 5.55e-92 278 48 2 287 3 psuG Pseudouridine-5'-phosphate glycosidase Kosmotoga olearia (strain ATCC BAA-1733 / DSM 21960 / TBF 19.5.1)
A9B4S4 1.79e-91 277 52 1 283 3 psuG Pseudouridine-5'-phosphate glycosidase Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785 / 114-95)
A7HMA1 3.16e-91 276 46 3 299 3 psuG Pseudouridine-5'-phosphate glycosidase Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1)
Q9USY1 4.25e-91 289 51 1 296 3 SPBC1861.05 Pseudouridine-metabolizing bifunctional protein C1861.05 Schizosaccharomyces pombe (strain 972 / ATCC 24843)
A5UT22 7.85e-91 276 50 3 296 3 psuG Pseudouridine-5'-phosphate glycosidase Roseiflexus sp. (strain RS-1)
Q7N4X5 8.67e-89 271 47 1 296 3 psuG1 Pseudouridine-5'-phosphate glycosidase 1 Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
B5Y6G9 4.85e-87 266 47 1 296 3 psuG Pseudouridine-5'-phosphate glycosidase Coprothermobacter proteolyticus (strain ATCC 35245 / DSM 5265 / OCM 4 / BT)
Q1D739 1.36e-86 265 45 0 299 3 psuG Pseudouridine-5'-phosphate glycosidase Myxococcus xanthus (strain DK1622)
A4F929 3.18e-85 261 48 1 294 3 psuG Pseudouridine-5'-phosphate glycosidase Saccharopolyspora erythraea (strain ATCC 11635 / DSM 40517 / JCM 4748 / NBRC 13426 / NCIMB 8594 / NRRL 2338)
A8GCG3 4.25e-84 258 44 1 305 3 psuG Pseudouridine-5'-phosphate glycosidase Serratia proteamaculans (strain 568)
B7ID34 1.72e-80 249 43 3 297 3 psuG Pseudouridine-5'-phosphate glycosidase Thermosipho africanus (strain TCF52B)
B9LGZ1 3.61e-79 246 49 2 303 3 psuG Pseudouridine-5'-phosphate glycosidase Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl)
Q0RBB8 8.73e-76 239 46 1 295 3 psuG Pseudouridine-5'-phosphate glycosidase Frankia alni (strain DSM 45986 / CECT 9034 / ACN14a)
B1W0X1 1.39e-73 232 45 2 288 3 psuG Pseudouridine-5'-phosphate glycosidase Streptomyces griseus subsp. griseus (strain JCM 4626 / CBS 651.72 / NBRC 13350 / KCC S-0626 / ISP 5235)
A4X4Y7 1.24e-71 227 48 2 285 3 psuG Pseudouridine-5'-phosphate glycosidase Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / JCM 13857 / NBRC 105044 / CNB-440)
A8F8N4 2.13e-71 225 41 3 284 3 psuG Pseudouridine-5'-phosphate glycosidase Pseudothermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / NBRC 107922 / TMO)
Q72JF9 3.36e-70 222 44 4 273 3 psuG Pseudouridine-5'-phosphate glycosidase Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27)
C1AA54 7.35e-69 219 44 3 292 3 psuG Pseudouridine-5'-phosphate glycosidase Gemmatimonas aurantiaca (strain DSM 14586 / JCM 11422 / NBRC 100505 / T-27)
Q1AYR4 8.93e-67 214 46 1 280 3 psuG Pseudouridine-5'-phosphate glycosidase Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129 / PRD-1)
B3GW58 6.78e-63 204 37 1 298 3 psuG Pseudouridine-5'-phosphate glycosidase Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CIP 107346 / CN-1)
B1LBK3 2.74e-51 173 36 4 285 3 psuG Pseudouridine-5'-phosphate glycosidase Thermotoga sp. (strain RQ2)
Q9X1H5 3.15e-51 173 36 4 285 1 psuG Pseudouridine-5'-phosphate glycosidase Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
A5IMC0 1.13e-50 172 35 4 284 3 psuG Pseudouridine-5'-phosphate glycosidase Thermotoga petrophila (strain ATCC BAA-488 / DSM 13995 / JCM 10881 / RKU-1)
B9K8C2 6.15e-48 165 33 4 290 3 psuG Pseudouridine-5'-phosphate glycosidase Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NBRC 107923 / NS-E)
B8JB61 2.49e-41 148 43 3 291 3 psuG Pseudouridine-5'-phosphate glycosidase Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258)

  • Number of RefSeq hits:

General

Source Morganella morganii S5
Locus tag HKOGLL_06780
Feature type CDS
Gene psuG
Product Pseudouridine-5'-phosphate glycosidase (pseudoU degradation)
Location 169208 - 170140 (strand: -1)
Length 933 (nucleotides) / 310 (amino acids)

Contig

Accession ZDB_683
Length 224720 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3241
Orthogroup size 5
N. genomes 5

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Genomic region

Domains

PF04227 Indigoidine synthase A like protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2313 Nucleotide transport and metabolism (F) F Pseudouridine-5'-phosphate glycosidase (pseudoU degradation)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K16329 pseudouridylate synthase [EC:4.2.1.70] Pyrimidine metabolism
Metabolic pathways		 -

Protein Sequence

MKTQQLNAEYLDISPEVAQALAEKKPVVALESTIISHGMPYPDNVKMALEVEQRIRDNGAIPATIAVINGRMKAGLSHDEIEMLGKEGHKVMKVSRRDLPFVIAQGIHGATTVASTMIIAEMAGIAVFATGGIGGVHRGAEHTFDISADLQELAQTNVAVVCAGAKSILDLGLTTEYLETYGVPVVGYQTDKLPAFFCRESEFPVTIRMETPETVAKALHAKWATGLNGGMVIANPIPHEFAMPEETINSAIAQAVREADEQGINGKASTPFLLARVAELTGGNSVNSNIELVFNNAKLAARIASAYQQL

Flanking regions ( +/- flanking 50bp)

AATCCCGGTCTGTCAAAAGACAGTGTTCACAAACTAATGGAATCACAAGCATGAAAACTCAACAACTGAACGCAGAATATCTGGACATTTCCCCTGAGGTTGCACAGGCGCTCGCGGAGAAAAAGCCGGTTGTGGCACTGGAATCCACCATTATTTCTCACGGTATGCCGTATCCGGACAACGTGAAAATGGCACTGGAAGTTGAACAGCGTATCCGTGACAACGGTGCGATCCCGGCAACGATTGCGGTGATTAACGGTCGCATGAAAGCGGGTCTGTCTCATGATGAGATTGAGATGCTCGGCAAAGAAGGCCACAAGGTGATGAAAGTGAGCCGCCGCGACCTGCCGTTTGTGATTGCTCAGGGCATCCACGGTGCGACGACCGTTGCCTCCACCATGATTATCGCGGAAATGGCCGGGATTGCTGTTTTTGCCACCGGCGGGATCGGCGGTGTGCACCGTGGTGCGGAACACACCTTTGATATCTCAGCGGATTTACAGGAACTGGCACAAACCAATGTGGCGGTTGTCTGCGCGGGTGCCAAATCCATTCTGGATCTGGGGCTGACCACAGAATATCTGGAAACTTATGGTGTGCCGGTTGTCGGTTACCAGACGGATAAATTACCGGCATTCTTCTGCCGTGAAAGCGAATTCCCGGTCACCATCCGTATGGAAACCCCGGAAACTGTGGCAAAAGCACTGCACGCCAAGTGGGCGACCGGCCTGAACGGCGGCATGGTAATTGCCAACCCGATCCCGCATGAGTTTGCCATGCCGGAAGAAACCATCAACAGCGCGATCGCACAGGCAGTACGCGAAGCGGATGAGCAGGGCATTAACGGCAAAGCAAGCACACCGTTCCTGCTGGCCCGTGTGGCAGAGCTGACCGGCGGTAACAGTGTTAATTCCAATATTGAGCTGGTGTTCAATAACGCGAAACTGGCTGCCCGTATCGCCTCCGCTTATCAGCAACTGTAAGCGGCTGACCGGTTACCGGTCATAACAACGAATGAAATACCTGACCCGGT