Homologs in group_3615

Help

4 homologs were identified in 4 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_20160 FBDBKF_20160 97.5 Morganella morganii S1 aph(3')-VI APH(3')-VI family aminoglycoside O-phosphotransferase
NLDBIP_19585 NLDBIP_19585 97.5 Morganella morganii S4 aph(3')-VI APH(3')-VI family aminoglycoside O-phosphotransferase
LHKJJB_19550 LHKJJB_19550 97.5 Morganella morganii S3 aph(3')-VI APH(3')-VI family aminoglycoside O-phosphotransferase
HKOGLL_19465 HKOGLL_19465 97.5 Morganella morganii S5 aph(3')-VI APH(3')-VI family aminoglycoside O-phosphotransferase

Distribution of the homologs in the orthogroup group_3615

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_3615

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P09885 6.38e-142 399 98 0 200 3 aphA-6 Aminoglycoside 3'-phosphotransferase Acinetobacter baumannii
P14508 3.29e-28 109 34 5 204 3 aphA-7 Aminoglycoside 3'-phosphotransferase Campylobacter jejuni
P0A3Y5 1.71e-27 107 33 4 207 1 aphA Aminoglycoside 3'-phosphotransferase Enterococcus faecalis
P0A3Y6 1.17e-26 105 33 4 207 3 aphA Aminoglycoside 3'-phosphotransferase Staphylococcus aureus
P00553 4.33e-24 98 31 5 204 1 aphA4 Aminoglycoside 3'-phosphotransferase Niallia circulans
P00551 9.45e-14 71 29 8 209 3 aphA1 Aminoglycoside 3'-phosphotransferase Escherichia coli
Q03447 3.52e-13 69 28 8 209 3 None Aminoglycoside 3'-phosphotransferase Salmonella typhimurium
P00552 2.17e-11 64 24 5 202 1 neo Aminoglycoside 3'-phosphotransferase Klebsiella pneumoniae
P00555 1.33e-10 62 27 8 209 3 aph Aminoglycoside 3'-phosphotransferase Streptomyces fradiae
P14509 2.04e-10 62 24 7 205 3 aphA Aminoglycoside 3'-phosphotransferase Escherichia coli

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_20200
Feature type CDS
Gene aph(3')-VIa
Product aminoglycoside O-phosphotransferase APH(3')-VIa
Location 11019 - 11621 (strand: -1)
Length 603 (nucleotides) / 200 (amino acids)

Contig

Accession contig_48
Length 11780 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3615
Orthogroup size 5
N. genomes 4

Actions

Genomic region

Domains

PF01636 Phosphotransferase enzyme family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3231 Translation, ribosomal structure and biogenesis (J) J Aminoglycoside phosphotransferase

AMR gene Annotation(s)

Gene Description Scope Type Class Subclass HMM
aph(3')-VIa aminoglycoside O-phosphotransferase APH(3')-VIa core AMR AMINOGLYCOSIDE AMIKACIN / KANAMYCIN None

Protein Sequence

MLSWLSEKLKVPELIMTFQDEQFEFMITKAINAKPISALFLTDQELLAIYKEVLNLLNSIAIIDCPFISNIDHRLKESKFFIDNQLLDDIDQDDFDAELWGDHKTYLSLWNELNETRVEERLVFSHGDITDSNIFIDKFNEIYFLDLGRAGLADEFVDISFVERCLREDASEETAKIFLKHLKNDRPDKRNYFLKLDELN

Flanking regions ( +/- flanking 50bp)

CTAGCACTTTATATACAGCGACCACATACAGTGTTTCTCGTGAAGCGAAAATGTTGAGTTGGCTCTCTGAGAAGTTAAAGGTGCCTGAACTCATCATGACTTTTCAGGATGAGCAGTTTGAATTCATGATCACTAAAGCGATCAATGCAAAACCAATTTCAGCGCTTTTTTTAACAGACCAAGAATTGCTTGCTATCTATAAGGAGGTACTCAATCTGTTAAATTCAATTGCTATTATTGATTGTCCATTTATTTCAAACATTGATCATCGGTTAAAAGAGTCAAAATTTTTTATTGATAACCAACTCCTTGATGATATAGATCAAGATGATTTTGACGCTGAATTATGGGGAGACCATAAAACTTACCTAAGTCTATGGAATGAGTTAAATGAGACTCGTGTTGAAGAAAGATTGGTTTTTTCTCATGGCGATATCACGGATAGTAATATTTTTATAGATAAATTCAATGAAATTTATTTTTTAGATCTTGGCCGTGCTGGGTTAGCAGATGAGTTTGTAGATATATCCTTTGTTGAACGTTGCCTAAGAGAGGATGCATCGGAGGAAACTGCTAAAATATTTTTAAAGCATTTAAAAAATGATAGACCTGACAAAAGGAATTATTTTTTAAAACTTGATGAATTGAATTGATTCCAAGCATTTTCTAAAAATACTTAATTGTCATTTTACGTCGATTCTTT