Homologs in group_62

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12 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_02505 FBDBKF_02505 56.6 Morganella morganii S1 roxA Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain
EHELCC_02975 EHELCC_02975 56.6 Morganella morganii S2 roxA Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain
EHELCC_15390 EHELCC_15390 100.0 Morganella morganii S2 roxA Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain
NLDBIP_00485 NLDBIP_00485 56.6 Morganella morganii S4 roxA Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain
NLDBIP_15920 NLDBIP_15920 100.0 Morganella morganii S4 roxA Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain
LHKJJB_01550 LHKJJB_01550 56.6 Morganella morganii S3 roxA Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain
LHKJJB_15920 LHKJJB_15920 100.0 Morganella morganii S3 roxA Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain
HKOGLL_01590 HKOGLL_01590 56.6 Morganella morganii S5 roxA Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain
HKOGLL_15040 HKOGLL_15040 100.0 Morganella morganii S5 roxA Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain
F4V73_RS02440 F4V73_RS02440 57.9 Morganella psychrotolerans - cupin domain-containing protein
F4V73_RS07380 F4V73_RS07380 89.5 Morganella psychrotolerans - cupin domain-containing protein
PMI_RS04340 PMI_RS04340 79.6 Proteus mirabilis HI4320 - cupin domain-containing protein

Distribution of the homologs in the orthogroup group_62

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_62

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P27431 0.0 527 66 0 372 1 roxA Ribosomal protein uL16 3-hydroxylase Escherichia coli (strain K12)
P44683 4.74e-45 162 32 12 351 1 HI_0396 Probable ribosomal oxygenase HI_0396 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
B4GUZ2 8.21e-07 54 22 7 209 3 GL12933 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 Drosophila persimilis
B5DUH6 5.19e-06 52 29 2 87 3 GA27866 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 Drosophila pseudoobscura pseudoobscura
A5PK74 2.8e-05 49 34 2 72 2 RIOX1 Ribosomal oxygenase 1 Bos taurus
Q9H6W3 2.81e-05 49 34 2 72 1 RIOX1 Ribosomal oxygenase 1 Homo sapiens
Q8CFC1 3.47e-05 49 25 10 224 2 Riox2 Ribosomal oxygenase 2 Rattus norvegicus
Q16W06 4.42e-05 49 23 8 203 3 AAEL009382 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 Aedes aegypti
A8QFQ3 5.19e-05 48 32 3 80 3 Bm1_53875 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 Brugia malayi
B4JMQ2 0.000111 47 30 5 119 3 GH24285 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 Drosophila grimshawi
Q5ZMM1 0.000121 47 23 8 210 2 RIOX1 Ribosomal oxygenase 1 Gallus gallus
B3NU20 0.000131 47 34 2 83 3 GG18702 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 Drosophila erecta
A3KP59 0.000143 47 26 11 200 2 riox1 Ribosomal oxygenase 1 Danio rerio
D3ZU57 0.000168 47 34 2 72 1 Riox1 Ribosomal oxygenase 1 Rattus norvegicus
B4R4H1 0.000205 47 36 4 86 3 GD16684 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 Drosophila simulans
Q9JJF3 0.000248 46 34 2 72 1 Riox1 Ribosomal oxygenase 1 Mus musculus
B4Q068 0.000444 45 32 2 79 3 GE16340 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 Drosophila yakuba
A8XEA2 0.000445 46 28 7 124 3 jmjc-1 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 Caenorhabditis briggsae
O01658 0.000567 45 28 7 123 3 jmjc-1 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 Caenorhabditis elegans
B4NP88 0.000729 45 31 4 89 3 GK15670 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 Drosophila willistoni

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_14585
Feature type CDS
Gene roxA
Product Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain
Location 11902 - 13023 (strand: 1)
Length 1122 (nucleotides) / 373 (amino acids)

Contig

Accession contig_19
Length 86773 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_62
Orthogroup size 13
N. genomes 7

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Genomic region

Domains

PF08007 JmjC domain
PF20514 ROXA-like winged helix

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2850 Translation, ribosomal structure and biogenesis (J) J Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K18850 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47] - -

Protein Sequence

MDYELNIDWQTFMESHWQKRPLLIKGGFRNFRDTISPDELAGLAMEDEVDSRIVTRFSGKWDVRHGPFQEFDGLGEKDWSILVQAVDHWHFPSAALMKPFRCLSDWRMDDLMISYSVPGGGVGPHLDQYDVFIIQGQGRRRWRVGEKIPMKQHAPHPDLLQVDPFDAIIDDEMVPGDILYIPPGFPHEGYAIEESLNYSVGFRAPNARELFSGFADYVIANELGSYRYSDPDLAFRDNPALIQQGELTKLHGMMQDLLDQPDVFRKWFGEFISQSRHELDLAPPEPAYSPDEIQELLSQGESLFRLNGLRVLRVGDTCFVNGEALKTPHIEAADVLCQYDEITAEMLGVAFSDPEFVTLLTVLINNGYWYFDD

Flanking regions ( +/- flanking 50bp)

GTTATACTCCTTTCATCTGCCTGATCACGGCGTTTATTGAGGACGAACACATGGATTATGAACTGAATATAGACTGGCAGACCTTTATGGAAAGCCACTGGCAAAAACGTCCGTTATTGATCAAAGGTGGTTTCCGCAATTTCCGCGACACCATTTCCCCCGATGAACTGGCGGGGCTGGCAATGGAAGATGAAGTCGACAGCCGTATCGTCACCCGTTTCAGCGGAAAATGGGATGTGCGCCACGGGCCGTTTCAGGAGTTTGACGGGCTAGGTGAGAAAGACTGGTCTATCCTGGTTCAGGCCGTTGATCACTGGCATTTCCCGTCTGCCGCACTGATGAAGCCGTTCCGCTGCCTGTCTGACTGGCGGATGGATGACCTGATGATCTCCTATTCTGTGCCGGGTGGCGGTGTGGGTCCGCATCTGGATCAGTATGATGTGTTTATTATTCAGGGCCAGGGCCGCCGCCGCTGGCGTGTCGGGGAAAAAATCCCGATGAAACAGCACGCGCCGCATCCTGATCTGTTACAGGTAGATCCGTTTGATGCCATTATTGATGATGAAATGGTGCCGGGCGATATCCTCTATATTCCGCCGGGATTCCCGCACGAAGGCTACGCCATTGAGGAATCACTGAACTATTCTGTCGGTTTCCGTGCCCCGAATGCCCGCGAGTTGTTCAGCGGCTTTGCCGACTATGTAATTGCCAATGAACTCGGCAGTTATCGCTACAGCGACCCGGATCTGGCGTTCCGTGATAATCCGGCGCTGATTCAGCAGGGCGAACTGACCAAGCTGCATGGTATGATGCAGGATCTGCTCGACCAGCCGGATGTGTTCCGCAAGTGGTTCGGTGAGTTTATTTCCCAGTCCCGCCATGAACTGGATCTAGCACCACCGGAGCCGGCGTACAGCCCGGATGAAATACAGGAACTGCTGTCACAGGGGGAATCCCTGTTCCGCCTGAATGGACTGCGGGTACTGCGTGTCGGTGATACCTGTTTTGTTAACGGCGAAGCCCTGAAAACCCCGCATATTGAAGCAGCGGATGTGCTCTGCCAGTATGATGAAATCACTGCCGAAATGCTGGGAGTTGCCTTCAGCGATCCGGAATTTGTGACCCTGCTGACAGTGCTGATTAATAACGGTTACTGGTATTTTGATGATTAATCCGCAATAAAATTGTATTCATCGTTCAGATAAAAGCGCCGCACCATTAT