Homologs in group_2882

Help

5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
EHELCC_17480 EHELCC_17480 100.0 Morganella morganii S2 qdoI Cupin domain protein related to quercetin dioxygenase
NLDBIP_18690 NLDBIP_18690 100.0 Morganella morganii S4 qdoI Cupin domain protein related to quercetin dioxygenase
LHKJJB_17920 LHKJJB_17920 100.0 Morganella morganii S3 qdoI Cupin domain protein related to quercetin dioxygenase
HKOGLL_18730 HKOGLL_18730 100.0 Morganella morganii S5 qdoI Cupin domain protein related to quercetin dioxygenase
F4V73_RS08115 F4V73_RS08115 86.1 Morganella psychrotolerans - XRE family transcriptional regulator

Distribution of the homologs in the orthogroup group_2882

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_2882

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P77626 5.47e-58 182 49 1 186 1 sutR HTH-type transcriptional regulator SutR Escherichia coli (strain K12)
C1CYP4 1.26e-07 51 35 0 62 1 ddrOC HTH-type transcriptional regulator DdrOC Deinococcus deserti (strain DSM 17065 / CIP 109153 / LMG 22923 / VCD115)
P55409 6.94e-06 45 35 0 60 4 NGR_a04070 Uncharacterized HTH-type transcriptional regulator y4dJ Sinorhizobium fredii (strain NBRC 101917 / NGR234)
C1D3U5 1.46e-05 46 32 0 64 1 ddrOP3 HTH-type transcriptional regulator DdrOP3 Deinococcus deserti (strain DSM 17065 / CIP 109153 / LMG 22923 / VCD115)
P0A9U7 2.59e-05 46 25 6 184 3 puuR HTH-type transcriptional regulator PuuR Shigella flexneri
P0A9U6 2.59e-05 46 25 6 184 1 puuR HTH-type transcriptional regulator PuuR Escherichia coli (strain K12)
P06533 5.35e-05 44 35 1 62 1 sinR HTH-type transcriptional regulator SinR Bacillus subtilis (strain 168)
P22753 7.86e-05 43 36 1 61 4 sinR HTH-type transcriptional regulator SinR Bacillus licheniformis
P14307 0.00061 40 31 0 60 4 None Control protein C.SmaI Serratia marcescens

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_11560
Feature type CDS
Gene qdoI
Product Cupin domain protein related to quercetin dioxygenase
Location 108761 - 109333 (strand: -1)
Length 573 (nucleotides) / 190 (amino acids)

Contig

Accession contig_13
Length 135581 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2882
Orthogroup size 6
N. genomes 6

Actions

Genomic region

Domains

PF01381 Helix-turn-helix
PF07883 Cupin domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1396 Transcription (K) K Transcriptional regulator, contains XRE-family HTH domain

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K23779 XRE family transcriptional regulator, regulator of sulfur utilization - -

Protein Sequence

MHDITPAVAETFKQLRAERGLSLSQAAQLTGVSKAMLGQIERGQSSPTVSTLWKIATGFNVAFSVFLEGAQPQVQAGLHSFATLPVFEQTRSGMRVTPLIPFDDELKTDLLKIDLLPGALSESGPHEPGVIEHVIMLEGALQLRLGDEWHTVSAGESLRFYADIPHAYANPGKTIVTLHNLIHYPRPADK

Flanking regions ( +/- flanking 50bp)

CACCGGATGCTATAACGGACAATGACATTTACCCGGAATAATGACAATTTATGCACGATATCACACCCGCTGTTGCAGAGACCTTTAAACAACTGCGTGCCGAACGCGGGCTGAGCCTCAGCCAGGCAGCACAACTGACCGGCGTCAGCAAAGCCATGCTCGGCCAGATTGAACGCGGCCAATCCAGCCCGACGGTATCCACGCTGTGGAAAATCGCCACCGGCTTCAATGTCGCTTTCTCTGTTTTTCTGGAAGGCGCACAGCCGCAGGTGCAGGCGGGGCTTCATTCGTTTGCAACACTGCCGGTCTTTGAACAGACCCGCTCCGGGATGCGTGTCACACCGCTGATCCCGTTTGATGATGAACTGAAAACGGATTTACTGAAGATTGACCTGCTGCCGGGGGCGCTCAGTGAATCCGGCCCTCATGAACCCGGGGTTATCGAACATGTCATTATGCTGGAAGGTGCATTACAACTGCGGCTGGGGGATGAGTGGCATACCGTTTCTGCCGGGGAATCCCTGCGCTTTTATGCGGATATCCCGCACGCTTACGCCAATCCCGGTAAGACCATTGTGACACTGCATAATCTGATCCATTACCCGCGTCCGGCGGACAAATAAAAAAGCGGGGTATAATAAATATACCCCGCTTTGACTTAACGGATCGTCTT