Homologs in group_3350

Help

4 homologs were identified in 4 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
EHELCC_17865 EHELCC_17865 100.0 Morganella morganii S2 - Holin
NLDBIP_05195 NLDBIP_05195 100.0 Morganella morganii S4 - Holin
LHKJJB_02075 LHKJJB_02075 100.0 Morganella morganii S3 - Holin
HKOGLL_15455 HKOGLL_15455 100.0 Morganella morganii S5 - Holin

Distribution of the homologs in the orthogroup group_3350

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_3350

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_11350
Feature type CDS
Gene -
Product Holin
Location 73737 - 74021 (strand: 1)
Length 285 (nucleotides) / 94 (amino acids)

Contig

Accession contig_13
Length 135581 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3350
Orthogroup size 5
N. genomes 5

Actions

Genomic region

Domains

PF05449 Putative 3TM holin, Phage_holin_3

Protein Sequence

MILPDLWVYTNFFVCGLAAIRLMNYQRNGAQYKFLPSLMAWLLIVAFGSVPLRILTNDYSHADPSEVAINVAGFILVMLAGGNVTKIFRGAKSD

Flanking regions ( +/- flanking 50bp)

ATTAACAAAGTGGTCGGAGCGACTATTGATAAATTCAGAGGGGGTGGAAGATGATCCTCCCGGACTTATGGGTTTACACCAATTTCTTTGTGTGTGGCCTGGCGGCTATCCGGCTGATGAACTACCAGCGCAACGGCGCACAATACAAGTTCTTACCATCACTCATGGCGTGGCTGTTAATCGTGGCCTTTGGCTCAGTACCGCTGCGCATTCTGACAAATGACTATTCCCATGCTGACCCGTCCGAGGTGGCGATAAACGTCGCCGGATTTATTCTGGTGATGCTGGCCGGCGGGAATGTGACGAAAATATTCAGAGGTGCAAAAAGTGACTGAACCAAAATGGATTACTGAAGCCCGGAAAGAGATCGGCGTATCAGAACACA