Homologs in group_3284

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4 homologs were identified in 4 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
EHELCC_10500 EHELCC_10500 100.0 Morganella morganii S2 hipB Transcriptional regulator, contains XRE-family HTH domain
NLDBIP_10845 NLDBIP_10845 100.0 Morganella morganii S4 hipB Transcriptional regulator, contains XRE-family HTH domain
LHKJJB_10510 LHKJJB_10510 100.0 Morganella morganii S3 hipB Transcriptional regulator, contains XRE-family HTH domain
HKOGLL_13570 HKOGLL_13570 100.0 Morganella morganii S5 hipB Transcriptional regulator, contains XRE-family HTH domain

Distribution of the homologs in the orthogroup group_3284

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3284

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_08910
Feature type CDS
Gene hipB
Product Transcriptional regulator, contains XRE-family HTH domain
Location 192 - 530 (strand: 1)
Length 339 (nucleotides) / 112 (amino acids)

Contig

Accession contig_10
Length 146103 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3284
Orthogroup size 5
N. genomes 5

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Genomic region

Domains

PF01381 Helix-turn-helix

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1396 Transcription (K) K Transcriptional regulator, contains XRE-family HTH domain

Protein Sequence

MVQKYQCIDSDLLNKNIGEVLYRFRKLKKISGEKLGFTLEISQQQVSRYELGKGNLTVSLLFRILTALDISLIVFLNELRKQYDSSDTVHTLLDIDNLLFLNKNINKPDFLL

Flanking regions ( +/- flanking 50bp)

CCGGGAATAACAACCATTCCTGTTATGACAGATTTAATCTACGGAGATAAATGGTGCAGAAATATCAATGCATAGATTCAGATTTACTCAATAAAAATATCGGGGAGGTGCTGTACAGATTTCGTAAGCTGAAAAAAATAAGCGGTGAGAAGTTAGGCTTTACACTTGAAATCAGTCAGCAACAGGTTTCCCGCTATGAGCTGGGTAAAGGGAATCTGACGGTCAGCCTGCTGTTCCGGATACTCACAGCACTGGATATCTCACTGATCGTTTTTCTGAATGAACTCAGAAAACAATATGATTCATCAGATACTGTTCATACTTTATTGGACATAGATAATTTATTGTTTTTAAATAAAAATATTAATAAACCCGATTTTTTATTGTAAAAATAACCACACCTTCTGCCCCGGCCATGCCACTGTCACCGGGGCCATGA