Homologs in group_1003

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
EHELCC_11985 EHELCC_11985 100.0 Morganella morganii S2 pspB envelope stress response membrane protein PspB
NLDBIP_12325 NLDBIP_12325 100.0 Morganella morganii S4 pspB envelope stress response membrane protein PspB
LHKJJB_12185 LHKJJB_12185 100.0 Morganella morganii S3 pspB envelope stress response membrane protein PspB
HKOGLL_10800 HKOGLL_10800 100.0 Morganella morganii S5 pspB envelope stress response membrane protein PspB
F4V73_RS03700 F4V73_RS03700 90.4 Morganella psychrotolerans pspB envelope stress response membrane protein PspB
PMI_RS06640 PMI_RS06640 69.9 Proteus mirabilis HI4320 pspB envelope stress response membrane protein PspB

Distribution of the homologs in the orthogroup group_1003

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_1003

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AFM9 1.15e-25 92 62 1 72 1 pspB Phage shock protein B Escherichia coli (strain K12)
P0AFN0 1.15e-25 92 62 1 72 3 pspB Phage shock protein B Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AFN1 1.15e-25 92 62 1 72 3 pspB Phage shock protein B Escherichia coli O157:H7

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_05605
Feature type CDS
Gene pspB
Product envelope stress response membrane protein PspB
Location 128801 - 129022 (strand: -1)
Length 222 (nucleotides) / 73 (amino acids)

Contig

Accession contig_5
Length 181448 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1003
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF06667 Phage shock protein B

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03970 phage shock protein B - -

Protein Sequence

MAFVFLGIPLTIFVLFVLPIWLWLHYNSQRGSRAGEFETRRLAALAENAQQMEARIKTLESILDAENPGWRQS

Flanking regions ( +/- flanking 50bp)

ATAAGGTCGGTAACAGGCTTTCCTGAATTAATACCATTAAGGACAAAAATATGGCATTTGTATTTTTAGGTATACCACTGACAATTTTCGTGTTGTTCGTGCTGCCGATCTGGTTATGGCTGCACTATAACAGTCAGCGGGGAAGCCGGGCCGGTGAATTTGAAACCCGCCGTCTTGCGGCGCTGGCGGAAAATGCTCAGCAGATGGAAGCGCGGATCAAAACCCTGGAATCGATTCTGGATGCGGAAAATCCGGGCTGGAGGCAATCATAATGGAATTTCAGTCACGCAAACTGTACCGCTATCCGGATGAAGGTATGTTC