Homologs in group_3184

Help

4 homologs were identified in 4 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
EHELCC_00030 EHELCC_00030 100.0 Morganella morganii S2 uxaA Altronate dehydratase
NLDBIP_03430 NLDBIP_03430 100.0 Morganella morganii S4 uxaA Altronate dehydratase
LHKJJB_04945 LHKJJB_04945 100.0 Morganella morganii S3 uxaA Altronate dehydratase
HKOGLL_02100 HKOGLL_02100 100.0 Morganella morganii S5 uxaA Altronate dehydratase

Distribution of the homologs in the orthogroup group_3184

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_3184

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
O34673 6.28e-76 251 32 8 510 2 uxaA Altronate dehydratase Bacillus subtilis (strain 168)
P42604 1.17e-74 248 32 8 511 1 uxaA Altronate dehydratase Escherichia coli (strain K12)
P39829 1.73e-50 184 28 11 522 1 garD Galactarate dehydratase (L-threo-forming) Escherichia coli (strain K12)
P42240 2.56e-50 183 28 13 520 3 garD Probable galactarate dehydratase (L-threo-forming) Bacillus subtilis (strain 168)
Q58Y43 7.23e-26 112 27 12 427 1 suyB (2R)-sulfolactate sulfo-lyase subunit beta Paracoccus pantotrophus
Q1QWP0 1.01e-22 103 29 4 274 1 suyB (2R)-sulfolactate sulfo-lyase subunit beta Chromohalobacter salexigens (strain ATCC BAA-138 / DSM 3043 / CIP 106854 / NCIMB 13768 / 1H11)

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_01515
Feature type CDS
Gene uxaA
Product Altronate dehydratase
Location 302146 - 303741 (strand: -1)
Length 1596 (nucleotides) / 531 (amino acids)

Contig

Accession contig_1
Length 309072 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3184
Orthogroup size 5
N. genomes 5

Actions

Genomic region

Domains

PF04295 D-galactarate dehydratase/Altronate hydrolase, second domain
PF08666 SAF domain
PF20629 D-galactarate/Altronate dehydratase, C-terminal

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2721 Carbohydrate transport and metabolism (G) G Altronate dehydratase

Kegg Ortholog Annotation(s)

Protein Sequence

MQKILRIDETDNLIVALKDLHAGEVYQWGDESITLVTNVKAKHKFALEVVPEGGIVSMYGTAVGKATKPIARGEVITVDNIRHYAAPVSLEENGDYEWQIPDVSAWKDRTFKGYVRDDGRVGTANYWLIFPLVFCENRNVTKLTDALNEALGYTNNSLKSFALDLTAGEQAQTTKPKLFPHIEGVRCITVTSGCGGATSDSKTMCDVLAAYADHPNVIGITVFSLGCEKAQRKMFKESLAARNPAFDKPALYFRQQEWNSEEEMMQTALKQTYECMKAVKPQSRTDVPLSYLKLGVKCGASDGFSGISGNPAMGLVSDWLVTLGGASGLAEFPELCGAEGDMVKRCIRFEDKKKFLDLMGQYEKTANFFNTTIADNPSPGNIADGLITDAIKSTGAAKKGGKSPISAVCDYAEPMPDSGLSLVCTPGNDVDAVTGLVAAGCNVVIFSTGLGTPTGNPIVPVVKISTNSAIAQRLSDMIDYDCGPVIEGVPLPEISKGLFERVIETAGGEYKVKADRLEQFDFLLWKRSLDL

Flanking regions ( +/- flanking 50bp)

AATCCTGATTCATTGCCGTCATTTTGGCGGCAATAACCGGAAGGTGAGTTATGCAAAAGATATTACGTATTGATGAAACTGATAATTTAATCGTGGCACTGAAGGATTTACATGCCGGTGAGGTGTATCAGTGGGGTGATGAATCAATCACTCTGGTCACGAATGTAAAAGCCAAACACAAGTTTGCTCTGGAAGTGGTGCCGGAAGGCGGCATTGTCTCCATGTACGGCACTGCTGTCGGGAAAGCAACAAAACCGATTGCACGCGGGGAAGTGATTACCGTGGATAATATCCGCCATTATGCAGCCCCGGTATCACTGGAGGAGAACGGAGATTATGAATGGCAGATCCCGGATGTGTCGGCCTGGAAAGACCGGACATTTAAAGGTTATGTCCGTGATGATGGCCGGGTCGGAACAGCTAATTACTGGCTGATTTTCCCGCTGGTGTTCTGTGAGAACCGCAATGTCACCAAGCTGACGGATGCATTGAATGAGGCGCTGGGCTACACCAATAACAGTCTGAAAAGTTTCGCTCTGGATCTGACCGCCGGTGAACAGGCGCAGACCACAAAACCTAAGCTGTTTCCGCATATTGAAGGTGTGCGCTGTATTACTGTGACCAGCGGCTGCGGTGGTGCCACCTCTGACAGTAAAACCATGTGTGATGTACTGGCTGCGTATGCGGATCATCCGAATGTGATCGGCATTACCGTGTTCAGCCTGGGATGTGAAAAAGCACAGCGCAAGATGTTCAAAGAGTCGCTGGCAGCACGTAATCCGGCATTTGATAAACCGGCGCTCTATTTCCGGCAGCAGGAATGGAACAGCGAAGAAGAGATGATGCAGACGGCGCTGAAACAAACCTATGAGTGCATGAAAGCGGTGAAACCTCAGAGCCGCACAGATGTACCGCTGTCATATCTTAAGCTCGGCGTGAAGTGCGGGGCGTCTGACGGGTTCTCGGGCATTTCCGGCAATCCGGCGATGGGACTGGTGTCGGACTGGCTGGTGACACTTGGCGGCGCTTCCGGTCTGGCGGAATTCCCGGAGCTGTGCGGTGCGGAAGGGGATATGGTAAAACGCTGCATCCGCTTTGAGGATAAAAAGAAATTCCTCGATCTGATGGGACAGTATGAGAAAACCGCGAACTTCTTTAATACCACTATCGCGGATAACCCGAGCCCCGGAAATATTGCTGATGGATTAATTACGGACGCAATTAAATCAACCGGAGCAGCCAAAAAAGGCGGAAAATCGCCGATCAGTGCGGTGTGTGACTATGCGGAACCGATGCCGGACAGCGGACTGTCTCTGGTCTGCACACCGGGAAATGATGTGGATGCGGTGACCGGATTGGTGGCTGCGGGCTGTAACGTTGTTATTTTTTCCACCGGGCTGGGAACACCGACAGGAAACCCTATCGTGCCGGTCGTCAAGATTTCCACCAACAGCGCTATCGCTCAGCGTTTGTCAGATATGATTGACTACGACTGCGGTCCGGTGATAGAAGGTGTGCCATTGCCGGAAATCAGTAAAGGGCTGTTTGAGCGGGTGATTGAAACGGCGGGCGGGGAATACAAGGTGAAAGCAGACCGTCTGGAGCAGTTCGATTTCCTGCTGTGGAAACGGTCACTGGATTTATAAAAAGTGTACTGTCACACAGATAAATAAAAAACGGGGAATATTCCCCGTTT