Homologs in group_562

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
EHELCC_00100 EHELCC_00100 100.0 Morganella morganii S2 rseC SoxR-reducing system protein RseC
NLDBIP_03360 NLDBIP_03360 100.0 Morganella morganii S4 rseC SoxR-reducing system protein RseC
LHKJJB_04875 LHKJJB_04875 100.0 Morganella morganii S3 rseC SoxR-reducing system protein RseC
HKOGLL_02170 HKOGLL_02170 100.0 Morganella morganii S5 rseC SoxR-reducing system protein RseC
F4V73_RS01960 F4V73_RS01960 85.7 Morganella psychrotolerans rseC SoxR-reducing system protein RseC
PMI_RS09335 PMI_RS09335 70.1 Proteus mirabilis HI4320 rseC SoxR-reducing system protein RseC

Distribution of the homologs in the orthogroup group_562

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_562

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P46187 2.36e-51 164 53 0 145 1 rseC Protein RseC Escherichia coli (strain K12)
P44060 7.84e-22 88 33 3 144 3 HI_0850 Uncharacterized protein HI_0850 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P44020 2.79e-15 71 30 3 133 3 HI_0589 Uncharacterized protein HI_0589 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_01445
Feature type CDS
Gene rseC
Product SoxR-reducing system protein RseC
Location 288581 - 289048 (strand: -1)
Length 468 (nucleotides) / 155 (amino acids)

Contig

Accession contig_1
Length 309072 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_562
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF04246 Positive regulator of sigma(E), RseC/MucC

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3086 Signal transduction mechanisms (T) T RseC, positive regulator of sigma E activity

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03803 sigma-E factor negative regulatory protein RseC - -

Protein Sequence

MVKEWATVVRWQDGRAVLRYGSSAGCGSCKARAACGSYLLNKLGPEAEHQLEIPVSEPLVTGQKVEVGIPESSLLRSAMLVYLTPLLGLFAGAGLVQALTESQSAVLAGGLLGGAAGFLLARKIARHWSGSADYEPVILQIGLPPSELSIDMCES

Flanking regions ( +/- flanking 50bp)

GGCGACAGCCCGGCAGATAGCTGACGGTGTGACATTCAGCGGAGGTTAATATGGTAAAAGAGTGGGCAACCGTGGTGCGCTGGCAGGACGGGCGTGCGGTGTTGCGTTACGGGTCATCTGCCGGATGCGGCAGTTGCAAAGCCCGGGCGGCATGCGGCTCTTATCTGCTGAATAAACTGGGGCCGGAAGCGGAGCATCAGCTTGAAATTCCGGTCAGTGAACCGCTGGTGACCGGTCAGAAAGTGGAAGTCGGGATCCCGGAAAGCAGCCTGCTGCGCTCGGCAATGCTGGTGTATCTCACGCCGCTGCTGGGTTTATTTGCCGGTGCGGGGCTGGTGCAGGCACTGACGGAAAGTCAGTCTGCGGTTCTCGCGGGTGGTCTGCTGGGCGGCGCAGCAGGGTTCCTGCTGGCGCGTAAAATTGCCCGCCACTGGAGCGGCTCAGCGGATTATGAGCCGGTCATCTTGCAAATAGGCCTGCCGCCGTCAGAGCTCAGTATTGATATGTGTGAGTCCTGATTTATCCGGGCTCTCCTGTTGTACAGTATGCCGGTCATGATTTGACCGGC