Homologs in group_2784

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08795 FBDBKF_08795 85.6 Morganella morganii S1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
EHELCC_12730 EHELCC_12730 85.6 Morganella morganii S2 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
NLDBIP_13070 NLDBIP_13070 85.6 Morganella morganii S4 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
LHKJJB_13485 LHKJJB_13485 85.6 Morganella morganii S3 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
HKOGLL_11545 HKOGLL_11545 85.6 Morganella morganii S5 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA

Distribution of the homologs in the orthogroup group_2784

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2784

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P28815 6.25e-11 62 23 2 163 1 tetC Transposon Tn10 TetC protein Escherichia coli
Q9AIU0 9.35e-08 53 40 2 83 1 ttgR HTH-type transcriptional regulator TtgR Pseudomonas putida (strain DOT-T1E)
Q88N29 1.02e-07 53 40 2 83 3 ttgR Probable HTH-type transcriptional regulator TtgR Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)
Q9KJC4 1.02e-07 53 40 2 83 3 arpR Probable HTH-type transcriptional regulator ArpR Pseudomonas putida
Q8NQ97 5.55e-07 51 43 0 51 1 acnR HTH-type transcriptional repressor AcnR Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / BCRC 11384 / CCUG 27702 / LMG 3730 / NBRC 12168 / NCIMB 10025 / NRRL B-2784 / 534)
Q8FTA6 8.93e-07 50 43 0 51 3 acnR HTH-type transcriptional repressor AcnR Corynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395)
P0C068 9.82e-07 50 39 2 83 3 mepR Probable HTH-type transcriptional regulator MepR Pseudomonas putida
Q6NH62 4.04e-06 48 42 0 50 3 acnR HTH-type transcriptional repressor AcnR Corynebacterium diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype gravis)
P0ACT1 5.86e-06 48 40 1 60 3 acrR HTH-type transcriptional regulator AcrR Shigella flexneri
P0ACS9 5.86e-06 48 40 1 60 1 acrR HTH-type transcriptional regulator AcrR Escherichia coli (strain K12)
P0ACT0 5.86e-06 48 40 1 60 3 acrR HTH-type transcriptional regulator AcrR Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ACT2 1.18e-05 47 40 1 60 4 envR Probable acrEF/envCD operon repressor Escherichia coli (strain K12)
P0ACT3 1.18e-05 47 40 1 60 3 envR Probable acrEF/envCD operon repressor Escherichia coli O157:H7
P39897 1.86e-05 47 34 2 81 1 mtrR HTH-type transcriptional regulator MtrR Neisseria gonorrhoeae
Q9R9T9 1.88e-05 47 36 3 90 1 srpR HTH-type transcriptional regulator SrpR Pseudomonas putida
O31500 5.57e-05 46 33 0 51 4 yerO Uncharacterized HTH-type transcriptional regulator YerO Bacillus subtilis (strain 168)
Q93PU7 5.9e-05 44 37 1 72 1 ttgW Uncharacterized HTH-type transcriptional regulator TtgW Pseudomonas putida (strain DOT-T1E)
Q4JVM3 6.67e-05 45 38 0 52 3 acnR HTH-type transcriptional repressor AcnR Corynebacterium jeikeium (strain K411)
O53165 7.08e-05 45 40 0 50 1 Rv1474c HTH-type transcriptional repressor Rv1474c Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
O33453 0.000119 44 27 6 191 2 cymR HTH-type transcriptional regulator CymR Pseudomonas putida
P0ACT9 0.000282 43 35 1 60 3 uidR HTH-type transcriptional regulator UidR Shigella flexneri
P0ACT6 0.000282 43 35 1 60 1 uidR HTH-type transcriptional regulator UidR Escherichia coli (strain K12)
P0ACT7 0.000282 43 35 1 60 3 uidR HTH-type transcriptional regulator UidR Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ACT8 0.000282 43 35 1 60 3 uidR HTH-type transcriptional regulator UidR Escherichia coli O157:H7
A9AN01 0.00033 43 32 0 67 3 betI HTH-type transcriptional regulator BetI Burkholderia multivorans (strain ATCC 17616 / 249)
O34619 0.000346 43 25 1 81 4 lmrA HTH-type transcriptional regulator LmrA Bacillus subtilis (strain 168)
A9M9H9 0.00037 43 34 0 79 3 betI HTH-type transcriptional regulator BetI Brucella canis (strain ATCC 23365 / NCTC 10854 / RM-666)
Q1BQE0 0.000381 43 32 0 67 3 betI HTH-type transcriptional regulator BetI Burkholderia orbicola (strain AU 1054)
B1K709 0.000381 43 32 0 67 3 betI HTH-type transcriptional regulator BetI Burkholderia orbicola (strain MC0-3)
A0B2F5 0.000381 43 32 0 67 3 betI HTH-type transcriptional regulator BetI Burkholderia cenocepacia (strain HI2424)
Q39A42 0.000392 43 32 0 67 3 betI HTH-type transcriptional regulator BetI Burkholderia lata (strain ATCC 17760 / DSM 23089 / LMG 22485 / NCIMB 9086 / R18194 / 383)
B4EHJ0 0.000392 43 32 0 67 3 betI HTH-type transcriptional regulator BetI Burkholderia cenocepacia (strain ATCC BAA-245 / DSM 16553 / LMG 16656 / NCTC 13227 / J2315 / CF5610)
Q0B713 0.000415 43 32 0 67 3 betI HTH-type transcriptional regulator BetI Burkholderia ambifaria (strain ATCC BAA-244 / DSM 16087 / CCUG 44356 / LMG 19182 / AMMD)
B1Z032 0.000415 43 32 0 67 3 betI HTH-type transcriptional regulator BetI Burkholderia ambifaria (strain MC40-6)
Q2T6C8 0.000461 42 32 0 67 3 betI HTH-type transcriptional regulator BetI Burkholderia thailandensis (strain ATCC 700388 / DSM 13276 / CCUG 48851 / CIP 106301 / E264)
Q8G2M8 0.000568 42 35 0 53 1 bepR HTH-type transcriptional repressor BepR Brucella suis biovar 1 (strain 1330)
Q63KK9 0.000638 42 32 0 67 3 betI HTH-type transcriptional regulator BetI Burkholderia pseudomallei (strain K96243)
A3NKP7 0.000638 42 32 0 67 3 betI HTH-type transcriptional regulator BetI Burkholderia pseudomallei (strain 668)
Q3JLL9 0.000638 42 32 0 67 3 betI HTH-type transcriptional regulator BetI Burkholderia pseudomallei (strain 1710b)
A3P6A9 0.000638 42 32 0 67 3 betI HTH-type transcriptional regulator BetI Burkholderia pseudomallei (strain 1106a)
Q62CH6 0.000638 42 32 0 67 3 betI HTH-type transcriptional regulator BetI Burkholderia mallei (strain ATCC 23344)
A2RWD7 0.000638 42 32 0 67 3 betI HTH-type transcriptional regulator BetI Burkholderia mallei (strain NCTC 10229)
A3MEC5 0.000638 42 32 0 67 3 betI HTH-type transcriptional regulator BetI Burkholderia mallei (strain NCTC 10247)
A4JJG4 0.00076 42 32 0 67 3 betI HTH-type transcriptional regulator BetI Burkholderia vietnamiensis (strain G4 / LMG 22486)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS19600
Feature type CDS
Gene -
Product TetR/AcrR family transcriptional regulator
Location 107970 - 108557 (strand: 1)
Length 588 (nucleotides) / 195 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2784
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF00440 Bacterial regulatory proteins, tetR family
PF21351 Tetracyclin repressor-like, C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1309 Transcription (K) K DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA

Protein Sequence

MVHKPRAEMIEETRTKLITAARRQFGTAGYAATVMDDLTAQAGLTRGALYHHFGDKRGLFLAVLQNLDQELDARLDMAEKEATDEWQAFKARCQGYLAMSLEPEVQRIMFRDAASVLDYSILKSNELACVQGITRRLTHLMEKGLIKQVSPQVLALFINGGLYECAMWIVHSDEPDITYKNVRVSFNQLMENLRM

Flanking regions ( +/- flanking 50bp)

AAAAGTGATATAGTGAGCAGATGAAATATGTTAACCCCCGGAGTGACAAGATGGTTCATAAACCACGCGCAGAGATGATAGAAGAGACCAGGACAAAGCTCATTACTGCTGCCCGGCGGCAGTTTGGCACGGCGGGCTATGCCGCGACAGTGATGGATGACCTGACCGCTCAGGCGGGTCTTACCCGTGGCGCGCTTTATCATCATTTCGGGGACAAACGGGGCTTATTCCTGGCGGTATTACAGAATCTGGATCAGGAACTGGATGCGCGCCTGGATATGGCAGAAAAAGAAGCAACGGATGAATGGCAGGCATTCAAGGCGCGCTGTCAGGGCTATCTGGCAATGAGTCTGGAGCCGGAAGTGCAGCGTATTATGTTTCGTGATGCGGCATCAGTACTGGATTATTCCATTCTTAAATCTAATGAACTGGCGTGTGTGCAGGGAATTACCCGGCGTCTTACCCATCTGATGGAAAAGGGATTGATAAAGCAGGTTTCACCGCAGGTGCTGGCGCTGTTTATTAATGGCGGGTTATATGAATGCGCAATGTGGATAGTCCACAGTGATGAACCGGATATTACATATAAAAATGTACGGGTTTCATTTAACCAGTTAATGGAAAATCTGCGGATGTAGGATGAGGTGGTTATTTAATCGTCATTTCACTATTTATCGTTCAAAACCCG