Homologs in group_3870

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1 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
F4V73_RS19225 F4V73_RS19225 85.5 Morganella psychrotolerans - Rop family plasmid primer RNA-binding protein

Distribution of the homologs in the orthogroup group_3870

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3870

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P03051 6.32e-15 64 50 1 60 1 rop Regulatory protein rop Escherichia coli

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS19185
Feature type CDS
Gene -
Product Rop family plasmid primer RNA-binding protein
Location 2194 - 2382 (strand: -1)
Length 189 (nucleotides) / 62 (amino acids)

Contig

Accession term accessions NZ_VXKB01000013 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 5246 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3870
Orthogroup size 2
N. genomes 1

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Genomic region

Domains

PF01815 Rop protein

Protein Sequence

MTKQEKAVVNMAKFLQAQSLLLLEKLNELDSDKLDAETNLCEELHEQAESLHRQLSTKLGKR

Flanking regions ( +/- flanking 50bp)

CAGCAGATAAGATTTTGTACAATCAGTGAGGAAATGGACGGATATTAAAGATGACGAAGCAGGAAAAAGCTGTCGTAAACATGGCTAAGTTTTTACAGGCTCAGAGTCTGCTCTTACTCGAGAAACTGAATGAGCTGGATTCAGATAAACTCGATGCGGAAACCAACCTTTGTGAAGAACTCCATGAACAAGCGGAGTCACTACACAGACAACTGAGCACAAAGCTGGGCAAGAGGTAGCCCTTTTACAATAGGCTCCGCCCTCCTGACGAGCTTCACAAAAATCGATT