Homologs in group_4275

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0 homologs were identified in 0 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product

Distribution of the homologs in the orthogroup group_4275

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_4275

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P22308 2.28e-171 480 75 3 319 3 repA Replication initiation protein Escherichia coli
P17492 2.2e-21 95 28 9 246 3 None Replication protein Neisseria gonorrhoeae
P62539 7.12e-06 50 20 6 227 3 repE Replication initiation protein Salmonella typhi
P62538 7.12e-06 50 20 6 227 3 repE Replication initiation protein Escherichia coli
P03856 8.21e-05 47 19 7 228 1 repE Replication initiation protein Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS19160
Feature type CDS
Gene -
Product replication initiation protein
Location 8845 - 9801 (strand: 1)
Length 957 (nucleotides) / 318 (amino acids)

Contig

Accession term accessions NZ_VXKB01000012 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 10864 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_4275
Orthogroup size 1
N. genomes 1

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Genomic region

Domains

PF01051 Initiator Replication protein, WH1
PF21205 Initiator Rep protein, WH2

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG5527 Mobilome: prophages, transposons (X) X Protein involved in initiation of plasmid replication

Protein Sequence

MSELVVFKANELAVSRYDLTEHETKLILCGVALLNPTIDDPNEDQRTVAFTYQQYAQMMGLSNDNAYQRLKNITRELMTRTIEIIYPTGPISERIFQWVNYAEFNRDKQAVKLRFSKEIVPYLFQLKRFIKYNLEHVKAFENKYSMRVYEWLLKELTQRKTNKANIEISLKEFKFMLMLEKNYPEFKKFNHWVLKPISKDLNTYSNMKLTIEKRGRPADTLIFQVELDKQIDLVTELAKDPASKKEDKTIRLTPDNRLHEGLKTTLHDALTAKIQLTSFEAKFLSDMQSKYDLNGSFTWLTQKQRTTLEKILAKYGRI

Flanking regions ( +/- flanking 50bp)

AAAACCTTTATTGTAAGTACAGCGATTTATACCCCTTCACCGAGGTTGCTATGTCTGAATTAGTTGTTTTCAAAGCAAATGAATTAGCAGTGAGCCGTTACGACCTTACTGAGCATGAAACCAAATTGATTTTGTGTGGTGTGGCGTTACTCAATCCAACAATTGATGATCCTAATGAAGATCAACGAACGGTTGCATTTACTTATCAGCAATATGCACAAATGATGGGTTTATCAAATGATAATGCTTATCAGAGATTAAAAAACATAACTCGAGAATTGATGACTCGCACCATTGAAATAATCTATCCAACAGGACCTATATCTGAGCGAATATTTCAGTGGGTAAATTACGCGGAGTTTAATAGGGATAAGCAAGCGGTAAAACTTAGATTTAGTAAGGAAATAGTGCCATATTTATTTCAATTGAAAAGATTTATTAAATATAACCTAGAGCACGTAAAAGCCTTTGAAAACAAGTATTCCATGCGCGTCTATGAATGGTTATTAAAGGAATTAACTCAACGTAAAACCAATAAAGCTAACATTGAAATAAGCCTTAAAGAATTCAAGTTTATGTTGATGCTAGAAAAAAATTATCCTGAATTTAAAAAATTCAATCATTGGGTTTTAAAACCAATCTCAAAAGATTTAAATACCTACAGCAACATGAAGCTGACTATTGAAAAACGCGGTCGTCCTGCTGACACACTGATCTTTCAAGTTGAACTGGATAAACAAATTGACCTTGTAACTGAACTAGCAAAAGATCCAGCATCAAAAAAAGAAGATAAGACAATCCGTTTAACGCCTGATAATCGTCTTCATGAGGGGCTAAAAACAACATTGCATGATGCTTTAACTGCAAAAATTCAACTGACTAGTTTTGAAGCAAAATTCCTGAGCGATATGCAAAGCAAGTACGATCTTAACGGCTCATTTACATGGCTGACTCAAAAACAACGAACTACGCTAGAGAAAATTCTGGCGAAATACGGGCGGATATGAGGTATCTATGGCACTGGTATCAGTTACAGAGGCAGCCAGACTAACTGGAA