Homologs in group_2956

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_15960 FBDBKF_15960 89.9 Morganella morganii S1 tomB Hha toxicity modulator TomB
NLDBIP_17395 NLDBIP_17395 89.9 Morganella morganii S4 tomB Hha toxicity modulator TomB
LHKJJB_17265 LHKJJB_17265 89.9 Morganella morganii S3 tomB Hha toxicity modulator TomB
HKOGLL_17130 HKOGLL_17130 89.9 Morganella morganii S5 tomB Hha toxicity modulator TomB
PMI_RS00630 PMI_RS00630 33.6 Proteus mirabilis HI4320 tomB Hha toxicity modulator TomB

Distribution of the homologs in the orthogroup group_2956

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2956

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AAR0 3.05e-28 102 43 1 114 1 tomB Hha toxicity modulator TomB Escherichia coli (strain K12)
P0AAR1 3.05e-28 102 43 1 114 3 tomB Hha toxicity modulator TomB Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AAR2 3.05e-28 102 43 1 114 3 tomB Hha toxicity modulator TomB Escherichia coli O157:H7

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS16350
Feature type CDS
Gene tomB
Product Hha toxicity modulator TomB
Location 87382 - 87741 (strand: 1)
Length 360 (nucleotides) / 119 (amino acids)

Contig

Accession term accessions NZ_VXKB01000006 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 212134 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2956
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF10757 Biofilm formation regulator YbaJ

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K19162 hha toxicity modulator TomB - -

Protein Sequence

MDEYTPRNYDIAVLKYLCDELCHDGIHTLIRSNSYWVNDLTSDSNLKLNELLGYIADVVWSFKIKHTQNKDLISFIDEYIDETYALFGCMEVSFNDIEEWKKMASLVSCMLTSEGHLVH

Flanking regions ( +/- flanking 50bp)

TTAACGTTTTTCAGCGCCTTATCATTCTCGGCTACATCCAGGAGGTGATTATGGACGAGTATACGCCACGAAATTACGATATTGCGGTACTGAAGTATCTGTGTGATGAACTCTGCCACGATGGCATACACACACTCATCAGAAGCAATAGTTATTGGGTTAATGATTTAACATCTGATTCAAACTTAAAACTAAATGAATTATTAGGCTACATTGCTGACGTAGTCTGGAGTTTTAAGATAAAACATACTCAAAATAAGGACCTCATTTCATTTATCGATGAATATATCGATGAAACCTATGCGCTTTTCGGGTGTATGGAAGTTTCATTTAATGATATTGAGGAATGGAAGAAGATGGCGTCGCTTGTAAGCTGTATGCTCACCAGCGAGGGACATCTTGTTCATTAAGGGAATATAAACTTAAATATCAATACATTGCGCAACAATAAACCAGCAAG