Homologs in group_2677

Help

5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_04945 FBDBKF_04945 86.8 Morganella morganii S1 cybC cytochrome b562
EHELCC_06235 EHELCC_06235 86.8 Morganella morganii S2 cybC cytochrome b562
NLDBIP_06555 NLDBIP_06555 86.8 Morganella morganii S4 cybC cytochrome b562
LHKJJB_03435 LHKJJB_03435 86.8 Morganella morganii S3 cybC cytochrome b562
HKOGLL_06910 HKOGLL_06910 86.8 Morganella morganii S5 cybC cytochrome b562

Distribution of the homologs in the orthogroup group_2677

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_2677

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0ABE8 6.66e-50 158 59 1 129 3 cybC Soluble cytochrome b562 Escherichia coli O157:H7
Q8CVG7 1.11e-49 157 58 1 129 3 cybC Soluble cytochrome b562 Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ABE7 5.1e-49 155 58 1 129 1 cybC Soluble cytochrome b562 Escherichia coli
P63727 1.06e-43 142 60 1 129 1 cybC Soluble cytochrome b562 Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P63728 1.06e-43 142 60 1 129 3 cybC Soluble cytochrome b562 Salmonella typhi
Q8ZAU2 8.35e-31 109 44 1 129 3 cybC2 Probable soluble cytochrome b562 2 Yersinia pestis
Q9X6B1 8.96e-28 102 41 2 125 3 cybC1 Probable soluble cytochrome b562 1 Yersinia pestis
Q9CMY0 4.84e-08 51 25 1 125 3 PM0670 Uncharacterized protein PM0670 Pasteurella multocida (strain Pm70)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS16085
Feature type CDS
Gene cybC
Product cytochrome b562
Location 19605 - 19994 (strand: -1)
Length 390 (nucleotides) / 129 (amino acids)

Contig

Accession term accessions NZ_VXKB01000006 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 212134 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2677
Orthogroup size 6
N. genomes 6

Actions

Genomic region

Domains

PF07361 Cytochrome b562

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3783 Energy production and conversion (C) C Soluble cytochrome b562

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K15536 soluble cytochrome b562 - -

Protein Sequence

MSKNILALLVVSVCAFGAVTASAAGLSDNMKTLNANLQVVEKTDDAAELKNALSQMRTAALSAKEETPAKLKGKAADSAEMKDYHHGYDVLVGQIDDALKLTEEGKIPQAKAMAEQFKATRGEYHKKYR

Flanking regions ( +/- flanking 50bp)

TCTTGTGATGTTTTGTCGTATTTTTATATTAATAAATAAAGGAAGCACTGATGAGTAAAAATATATTAGCCCTGCTGGTGGTTTCTGTCTGTGCATTTGGTGCAGTGACCGCATCCGCTGCCGGGCTTTCAGATAATATGAAAACCCTGAACGCAAATTTGCAGGTCGTTGAAAAAACGGATGACGCAGCGGAGCTGAAAAATGCCCTGTCACAGATGCGTACCGCCGCATTGAGTGCCAAAGAAGAAACACCTGCCAAATTAAAAGGTAAAGCCGCGGACAGCGCAGAAATGAAAGATTATCATCATGGTTATGATGTGCTGGTCGGACAAATTGACGATGCGCTGAAACTGACCGAAGAAGGTAAAATTCCGCAGGCGAAAGCGATGGCTGAACAATTTAAAGCCACCCGTGGTGAGTATCACAAAAAATACCGCTGACGGATAACGCAGTGAATTACAAATAAAGAGGGGAGCCGGAACGCTCCCCT