Homologs in group_1088

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_06185 FBDBKF_06185 75.5 Morganella morganii S1 - Prepilin peptidase dependent protein A
EHELCC_09230 EHELCC_09230 75.5 Morganella morganii S2 - Prepilin peptidase dependent protein A
NLDBIP_09610 NLDBIP_09610 75.5 Morganella morganii S4 - Prepilin peptidase dependent protein A
LHKJJB_08145 LHKJJB_08145 75.5 Morganella morganii S3 - Prepilin peptidase dependent protein A
HKOGLL_07695 HKOGLL_07695 75.5 Morganella morganii S5 - Prepilin peptidase dependent protein A
PMI_RS11450 PMI_RS11450 27.2 Proteus mirabilis HI4320 - prepilin-type N-terminal cleavage/methylation domain-containing protein

Distribution of the homologs in the orthogroup group_1088

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1088

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P33554 1.21e-11 63 27 3 161 3 ppdA Prepilin peptidase-dependent protein A Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS15730
Feature type CDS
Gene -
Product peptidase
Location 148684 - 149274 (strand: 1)
Length 591 (nucleotides) / 196 (amino acids)

Contig

Accession term accessions NZ_VXKB01000005 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 213534 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1088
Orthogroup size 7
N. genomes 7

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Genomic region

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2165 Cell motility (N)
Intracellular trafficking, secretion, and vesicular transport (U)
Extracellular structures (W)		 NUW Type II secretory pathway, pseudopilin PulG

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02679 prepilin peptidase dependent protein A - -

Protein Sequence

MIVFSVWLLFLPVASHLLPPSVPDICKPVIFSSGSIRADATMQTEKGISLMEMIIVLFIMALPVTMLGVSWENFREKRHLTETAALFHQYLSSHKLRATYLNETRQISIVFGDNSGACHQVSPAVCDRETDGFTPLEGVRIASGTINSVLFWGTRHTASAASFLLENRQGQIKLIISAPGRIRLCTPGQLSGIPAC

Flanking regions ( +/- flanking 50bp)

ACTGCTGTTTTCCCGTCAAAATATAATCTTCGGCACAACACGAAAAAAAGATGATCGTTTTCAGTGTATGGCTGTTATTTCTTCCTGTTGCATCGCATTTATTACCGCCTTCAGTACCGGATATCTGTAAACCCGTTATTTTTTCATCAGGATCAATCCGGGCAGATGCAACGATGCAGACAGAAAAAGGGATTTCACTGATGGAAATGATAATCGTGTTGTTTATTATGGCATTACCCGTAACTATGCTGGGTGTGTCATGGGAGAATTTCAGGGAAAAACGGCATCTGACAGAGACAGCGGCACTGTTTCATCAGTATCTCAGCAGCCATAAGCTGCGGGCGACGTACCTGAATGAAACCAGGCAAATTTCCATTGTTTTTGGTGATAACAGCGGCGCCTGTCATCAGGTTTCACCAGCTGTCTGTGACAGAGAAACAGACGGATTTACACCGCTGGAGGGGGTACGTATTGCCTCCGGCACGATAAATTCAGTGTTGTTCTGGGGAACCCGCCATACCGCATCCGCCGCCAGTTTTTTACTGGAGAACAGGCAAGGGCAGATAAAGCTGATTATTTCAGCCCCCGGGCGTATCCGGTTATGTACCCCGGGGCAGTTGTCCGGTATCCCGGCGTGTTGATAATGACTTTGTCATCAAGAGGCTCTCTTCTACTTGAGATGCTGGTCAGT