Homologs in group_1689

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_11780 FBDBKF_11780 93.3 Morganella morganii S1 slyD peptidylprolyl isomerase
EHELCC_14525 EHELCC_14525 93.3 Morganella morganii S2 slyD peptidylprolyl isomerase
NLDBIP_15620 NLDBIP_15620 93.3 Morganella morganii S4 slyD peptidylprolyl isomerase
LHKJJB_14990 LHKJJB_14990 93.3 Morganella morganii S3 slyD peptidylprolyl isomerase
HKOGLL_19295 HKOGLL_19295 93.3 Morganella morganii S5 slyD peptidylprolyl isomerase
PMI_RS13845 PMI_RS13845 84.2 Proteus mirabilis HI4320 slyD peptidylprolyl isomerase

Distribution of the homologs in the orthogroup group_1689

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1689

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0A9L2 1.08e-79 240 75 0 178 3 slyD FKBP-type peptidyl-prolyl cis-trans isomerase SlyD Shigella flexneri
P0A9K9 1.08e-79 240 75 0 178 1 slyD FKBP-type peptidyl-prolyl cis-trans isomerase SlyD Escherichia coli (strain K12)
P0A9L0 1.08e-79 240 75 0 178 3 slyD FKBP-type peptidyl-prolyl cis-trans isomerase SlyD Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0A9L1 1.08e-79 240 75 0 178 3 slyD FKBP-type peptidyl-prolyl cis-trans isomerase SlyD Escherichia coli O157:H7
Q9CKP2 1.15e-74 227 63 3 198 1 slyD FKBP-type peptidyl-prolyl cis-trans isomerase SlyD Pasteurella multocida (strain Pm70)
Q7CFU4 1.98e-70 216 67 1 197 1 slyD FKBP-type peptidyl-prolyl cis-trans isomerase SlyD Yersinia pestis
P44830 7.17e-70 215 68 0 154 3 slyD FKBP-type peptidyl-prolyl cis-trans isomerase SlyD Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q9KNX6 2.42e-62 196 55 1 187 1 slyD FKBP-type peptidyl-prolyl cis-trans isomerase SlyD Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
O07046 5.04e-37 132 51 1 168 3 slyD FKBP-type peptidyl-prolyl cis-trans isomerase SlyD Aeromonas hydrophila
O83369 2.06e-27 105 42 0 147 1 slyD FKBP-type peptidyl-prolyl cis-trans isomerase SlyD Treponema pallidum (strain Nichols)
O25748 2.54e-18 82 34 3 139 1 slyD FKBP-type peptidyl-prolyl cis-trans isomerase SlyD Helicobacter pylori (strain ATCC 700392 / 26695)
Q9ZK89 6.44e-17 79 33 3 143 3 slyD FKBP-type peptidyl-prolyl cis-trans isomerase SlyD Helicobacter pylori (strain J99 / ATCC 700824)
O52980 9.14e-15 72 39 2 112 1 None Short-type peptidyl-prolyl cis-trans isomerase Methanothermococcus thermolithotrophicus
P21863 5.09e-13 67 31 0 132 3 yaaD Probable FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase Pseudomonas fluorescens
Q57726 9.97e-13 67 37 2 116 3 MJ0278 Short-type peptidyl-prolyl cis-trans isomerase Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P0AEM3 1.9e-07 52 30 3 144 3 fkpB FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase Shigella flexneri
P0AEM0 1.9e-07 52 30 3 144 1 fkpB FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase Escherichia coli (strain K12)
P0AEM1 1.9e-07 52 30 3 144 3 fkpB FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AEM2 1.9e-07 52 30 3 144 3 fkpB FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase Escherichia coli O157:H7

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS14875
Feature type CDS
Gene slyD
Product peptidylprolyl isomerase
Location 210660 - 211346 (strand: 1)
Length 687 (nucleotides) / 228 (amino acids)

Contig

Accession term accessions NZ_VXKB01000004 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 258164 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1689
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1047 Posttranslational modification, protein turnover, chaperones (O) O Peptidyl-prolyl cis-trans isomerase, FKBP type

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03775 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] - -

Protein Sequence

MKVATDLVVSLAYQVRTEDGVLVDESPASAPLDYLHGRGSLISGLESALEGRIAGDVFDVDVGANDAYGQYDENLVQRVPKDVFMGVEELEVGMRFLADTDMGPVPVEITGVEGDEVIVDGNHMLAGQNLKFHVEVMGVREATAEELEHGHVHGEGEEGGCCGGHGHGEEGGCCGGGHHDHDHEHGEEGGCCGGGHHDHDHEHGEEGGCCGGGQGKGQGKGNGGCGCH

Flanking regions ( +/- flanking 50bp)

TACAATCGGCGCGTTAATTAAAATTTATCCCCGCAGATGTAGGAGATACCATGAAAGTAGCAACAGACCTGGTGGTGAGCTTAGCTTACCAGGTAAGAACAGAAGACGGCGTATTAGTTGATGAGTCTCCGGCAAGTGCTCCGTTAGACTATCTGCACGGTCGCGGCTCGCTGATCAGCGGGCTGGAAAGTGCACTGGAAGGCCGTATTGCCGGTGATGTTTTTGATGTTGATGTAGGCGCAAATGACGCTTACGGTCAGTATGACGAAAACCTGGTTCAGCGCGTTCCGAAAGATGTCTTTATGGGCGTTGAAGAGCTGGAAGTCGGCATGCGTTTCCTGGCTGATACCGATATGGGTCCTGTACCGGTTGAGATTACCGGTGTTGAAGGCGACGAAGTTATCGTCGACGGAAACCATATGCTGGCAGGTCAAAACCTGAAATTCCACGTCGAAGTGATGGGTGTGCGTGAAGCAACAGCGGAAGAGCTGGAGCACGGACATGTTCACGGCGAAGGTGAAGAAGGCGGTTGCTGTGGTGGTCACGGTCACGGTGAAGAGGGCGGTTGCTGCGGCGGCGGTCATCACGACCACGATCATGAACATGGCGAAGAGGGCGGTTGCTGCGGCGGCGGTCATCATGACCACGATCATGAACATGGCGAAGAAGGCGGTTGCTGTGGCGGTGGTCAGGGTAAAGGCCAGGGTAAAGGTAACGGCGGTTGTGGTTGTCACTGATAACCCGCGACTGAACCGGATAAAAAAAGCGCACTCTGATGCGCTTTTTT