Homologs in group_2848

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10600 FBDBKF_10600 90.5 Morganella morganii S1 atoA Acyl-CoA:acetate/3-ketoacid CoA transferase, beta subunit
EHELCC_14935 EHELCC_14935 90.5 Morganella morganii S2 atoA Acyl-CoA:acetate/3-ketoacid CoA transferase, beta subunit
NLDBIP_14765 NLDBIP_14765 90.5 Morganella morganii S4 atoA Acyl-CoA:acetate/3-ketoacid CoA transferase, beta subunit
LHKJJB_14580 LHKJJB_14580 90.5 Morganella morganii S3 atoA Acyl-CoA:acetate/3-ketoacid CoA transferase, beta subunit
HKOGLL_13200 HKOGLL_13200 90.5 Morganella morganii S5 atoA Acyl-CoA:acetate/3-ketoacid CoA transferase, beta subunit

Distribution of the homologs in the orthogroup group_2848

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2848

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P76459 1.47e-116 333 78 0 209 1 atoA Acetate CoA-transferase subunit beta Escherichia coli (strain K12)
P44874 4.55e-106 307 71 1 214 3 atoA Acetate CoA-transferase subunit beta Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P23673 1.05e-74 228 53 2 213 1 ctfB Acetoacetyl-CoA:acetate/butyrate CoA-transferase beta subunit Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / IAM 19013 / LMG 5710 / NBRC 13948 / NRRL B-527 / VKM B-1787 / 2291 / W)
P42316 5.89e-71 218 50 1 207 1 scoB Probable succinyl-CoA:3-ketoacid coenzyme A transferase subunit B Bacillus subtilis (strain 168)
P0C7I8 4.69e-70 216 52 1 206 3 lpsJ Succinyl-CoA:3-ketoacid coenzyme A transferase subunit B Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)
B0RVK3 5.11e-70 216 52 1 206 3 lpsJ Succinyl-CoA:3-ketoacid coenzyme A transferase subunit B Xanthomonas campestris pv. campestris (strain B100)
P56007 5.59e-69 213 50 2 205 1 scoB Succinyl-CoA:3-ketoacid coenzyme A transferase subunit B Helicobacter pylori (strain ATCC 700392 / 26695)
P9WPW3 1.09e-68 213 53 2 202 1 scoB Probable succinyl-CoA:3-ketoacid coenzyme A transferase subunit B Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WPW2 1.09e-68 213 53 2 202 3 scoB Probable succinyl-CoA:3-ketoacid coenzyme A transferase subunit B Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P63651 1.09e-68 213 53 2 202 3 scoB Probable succinyl-CoA:3-ketoacid coenzyme A transferase subunit B Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
Q9ZLE4 1.54e-68 212 50 2 205 3 scoB Succinyl-CoA:3-ketoacid coenzyme A transferase subunit B Helicobacter pylori (strain J99 / ATCC 700824)
Q9W058 1.61e-66 216 51 3 214 1 Scot Succinyl-CoA:3-ketoacid-coenzyme A transferase, mitochondrial Drosophila melanogaster
Q54JD9 2.1e-65 213 49 2 209 3 oxct1 Probable succinyl-CoA:3-ketoacid coenzyme A transferase, mitochondrial Dictyostelium discoideum
P55809 3.69e-63 207 47 3 216 1 OXCT1 Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial Homo sapiens
Q29551 1.26e-61 203 46 3 216 1 OXCT1 Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial Sus scrofa
Q9BYC2 4.46e-61 202 46 3 216 1 OXCT2 Succinyl-CoA:3-ketoacid coenzyme A transferase 2, mitochondrial Homo sapiens
B2GV06 2.17e-60 200 46 3 216 1 Oxct1 Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial Rattus norvegicus
Q9D0K2 5.45e-60 199 45 3 216 1 Oxct1 Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial Mus musculus
Q9ESL0 1.43e-57 192 46 4 217 2 Oxct2b Succinyl-CoA:3-ketoacid coenzyme A transferase 2B, mitochondrial Mus musculus
Q9JJN4 1.54e-57 192 46 4 217 2 Oxct2a Succinyl-CoA:3-ketoacid coenzyme A transferase 2A, mitochondrial Mus musculus
Q5XIJ9 4.64e-57 191 45 3 214 1 Oxct2a Succinyl-CoA:3-ketoacid coenzyme A transferase 2A, mitochondrial Rattus norvegicus
Q09450 8.56e-57 191 46 4 217 3 C05C10.3 Probable succinyl-CoA:3-ketoacid coenzyme A transferase, mitochondrial Caenorhabditis elegans
O34466 1.78e-56 181 43 2 207 3 yodR Probable coenzyme A transferase subunit beta Bacillus subtilis (strain 168)
P0A102 6.71e-48 159 41 3 206 1 pcaJ 3-oxoadipate CoA-transferase subunit B Pseudomonas putida
P0A101 6.71e-48 159 41 3 206 3 pcaJ 3-oxoadipate CoA-transferase subunit B Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)
Q59091 3.05e-42 145 38 2 205 1 pcaJ 3-oxoadipate CoA-transferase subunit B Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
F1CYZ5 1.22e-18 87 30 10 245 1 carA Caffeate CoA-transferase Acetobacterium woodii
P37766 1.15e-08 58 25 8 238 3 ydiF Acetate CoA-transferase YdiF Escherichia coli (strain K12)
Q8X5X6 1.31e-08 57 25 8 238 1 ydiF Acetate CoA-transferase YdiF Escherichia coli O157:H7
Q8VPF2 2.46e-06 50 26 8 219 1 catJ 3-oxoadipate CoA-transferase subunit B Pseudomonas knackmussii (strain DSM 6978 / CCUG 54928 / LMG 23759 / B13)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS14310
Feature type CDS
Gene -
Product 3-oxoacid CoA-transferase subunit B
Location 83990 - 84655 (strand: 1)
Length 666 (nucleotides) / 221 (amino acids)

Contig

Accession term accessions NZ_VXKB01000004 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 258164 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2848
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF01144 Coenzyme A transferase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2057 Lipid transport and metabolism (I) I Acyl-CoA:acetate/3-ketoacid CoA transferase, beta subunit

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K01035 acetate CoA/acetoacetate CoA-transferase beta subunit [EC:2.8.3.8 2.8.3.9] Lysine degradation
Aminobenzoate degradation
Butanoate metabolism
Metabolic pathways
Microbial metabolism in diverse environments
Two-component system		 -

Protein Sequence

MNAKELIARRVALELNDGDVVNLGIGLPTQVANYLPEGVYITLQSENGFLGLGPVTTPHKNLVNAGGQPCGILPGAAMFDSAFSFALIRGGHVDASVLGGLQVDQHANLANWVVPGKMVPGMGGAMDLVTGARKVIIAMEHCAKDGTAKILSDCTMPLTAVDAVDVLVTELALFRFENKQMVLCEFAPGVDIDTIREKTGAQFIVSPDLCEMPSGVTEGVV

Flanking regions ( +/- flanking 50bp)

ACACCAGGGGCGATTATTGACTGGCTGATTGTGGAATAAGGAAAACAATGATGAATGCAAAAGAATTGATTGCCCGCCGTGTGGCGCTGGAACTGAATGACGGGGATGTTGTTAATCTCGGGATTGGTCTGCCGACGCAGGTCGCGAACTATTTACCGGAAGGTGTGTATATTACGCTGCAATCGGAAAATGGTTTTCTGGGGCTGGGTCCGGTGACAACACCGCACAAAAATCTGGTCAATGCGGGCGGACAGCCCTGCGGTATTTTGCCGGGTGCGGCGATGTTTGACAGTGCGTTCTCCTTTGCGCTGATCCGGGGCGGTCATGTGGATGCGAGTGTGCTGGGCGGCTTACAGGTGGATCAGCATGCGAATCTCGCGAACTGGGTTGTGCCGGGCAAGATGGTGCCGGGCATGGGCGGCGCGATGGATCTCGTGACCGGCGCACGCAAAGTTATTATCGCGATGGAGCACTGTGCAAAAGATGGTACAGCCAAGATTTTATCTGATTGTACGATGCCGCTGACCGCTGTGGATGCGGTCGATGTGCTGGTGACTGAACTGGCGTTATTTCGTTTTGAAAATAAACAGATGGTGTTGTGTGAGTTTGCGCCCGGTGTGGATATTGACACTATCCGTGAGAAAACAGGCGCGCAATTTATTGTTTCGCCGGATCTCTGTGAGATGCCGTCAGGTGTTACTGAGGGGGTTGTATGATCCGAAGTATCTCCCGTGTGATGACCCGTGTGGTGAGCCGTTATCTGCCG