Homologs in group_2841

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10545 FBDBKF_10545 91.1 Morganella morganii S1 dctP TRAP-type C4-dicarboxylate transport system, periplasmic component
EHELCC_14880 EHELCC_14880 91.1 Morganella morganii S2 dctP TRAP-type C4-dicarboxylate transport system, periplasmic component
NLDBIP_14710 NLDBIP_14710 91.1 Morganella morganii S4 dctP TRAP-type C4-dicarboxylate transport system, periplasmic component
LHKJJB_14635 LHKJJB_14635 91.1 Morganella morganii S3 dctP TRAP-type C4-dicarboxylate transport system, periplasmic component
HKOGLL_13255 HKOGLL_13255 91.1 Morganella morganii S5 dctP TRAP-type C4-dicarboxylate transport system, periplasmic component

Distribution of the homologs in the orthogroup group_2841

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2841

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P43020 2.13e-78 245 42 5 303 3 yiiZ Uncharacterized protein YiiZ Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q128M1 2.94e-77 242 40 2 302 1 Bpro_3107 Solute-binding protein Bpro_3107 Polaromonas sp. (strain JS666 / ATCC BAA-500)
Q0B2F6 3.53e-75 237 36 3 326 1 Bamb_6123 Solute-binding protein Bamb_6123 Burkholderia ambifaria (strain ATCC BAA-244 / DSM 16087 / CCUG 44356 / LMG 19182 / AMMD)
Q1QUN2 1.56e-66 215 33 3 335 1 dctP Solute-binding protein Csal_2479 Chromohalobacter salexigens (strain ATCC BAA-138 / DSM 3043 / CIP 106854 / NCIMB 13768 / 1H11)
P44992 5.7e-55 185 33 2 289 1 HI_1028 Uncharacterized protein HI_1028 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P37676 3e-52 178 32 3 300 1 yiaO 2,3-diketo-L-gulonate-binding periplasmic protein YiaO Escherichia coli (strain K12)
P44542 4.82e-48 167 32 4 314 1 siaP Sialic acid-binding periplasmic protein SiaP Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q4QP41 1.69e-47 166 32 4 314 3 siaP Sialic acid-binding periplasmic protein SiaP Haemophilus influenzae (strain 86-028NP)
A1WPV4 6.4e-42 151 32 4 294 1 Veis_3954 Solute-binding protein Veis_3954 Verminephrobacter eiseniae (strain EF01-2)
Q16BC9 2.52e-41 149 30 2 267 1 RD1_1052 Solute-binding protein RD1_1052 Roseobacter denitrificans (strain ATCC 33942 / OCh 114)
Q312S0 1.38e-40 147 31 8 324 1 dctP Isethionate-binding periplasmic protein DctP Oleidesulfovibrio alaskensis (strain ATCC BAA-1058 / DSM 17464 / G20)
Q9KR64 7.39e-38 140 27 3 318 1 siaP Sialic acid-binding periplasmic protein SiaP Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P37735 1.42e-36 137 28 7 323 1 dctP C4-dicarboxylate-binding periplasmic protein DctP Rhodobacter capsulatus
P71336 5.64e-32 124 28 3 313 1 HI_0052 Uncharacterized protein HI_0052 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P55572 1.52e-31 127 31 3 286 3 NGR_a02460 Uncharacterized protein y4mM Sinorhizobium fredii (strain NBRC 101917 / NGR234)
Q9HU18 2.25e-31 123 26 3 300 1 dctP C4-dicarboxylate-binding periplasmic protein DctP Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q5LSJ5 3.53e-31 122 26 1 289 1 dctP Solute-binding protein SPO1773 Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3)
Q9KQR9 2.18e-30 120 28 6 295 3 dctP C4-dicarboxylate-binding periplasmic protein DctP Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
A3T0D1 1.56e-29 118 28 2 249 1 NAS141_03721 Solute-binding protein NAS141_03721 Sulfitobacter sp. (strain NAS-14.1)
P96600 5.83e-29 117 27 1 239 3 dctB C4-dicarboxylate-binding protein DctB Bacillus subtilis (strain 168)
A3QCW5 4.06e-26 109 26 7 311 1 dctP C4-dicarboxylate-binding periplasmic protein DctP Shewanella loihica (strain ATCC BAA-1088 / PV-4)
Q5LUA7 2.53e-18 87 27 6 230 1 uehA Ectoine/5-hydroxyectoine-binding periplasmic protein UehA Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3)
E1VBK1 4.08e-18 87 26 5 274 1 teaA Ectoine-binding periplasmic protein TeaA Halomonas elongata (strain ATCC 33173 / DSM 2581 / NBRC 15536 / NCIMB 2198 / 1H9)
Q315G1 1.52e-15 79 23 7 322 1 Dde_0634 Solute-binding protein Dde_0634 Oleidesulfovibrio alaskensis (strain ATCC BAA-1058 / DSM 17464 / G20)
Q21XD7 1.74e-11 67 26 9 256 1 Rfer_1840 Solute-binding protein Rfer_1840 Albidiferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118)
Q5SK82 1.72e-09 62 28 6 185 1 TTHA0766 Lactate-binding periplasmic protein TTHA0766 Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
Q3J1R2 5.62e-07 54 28 6 187 1 takP Alpha-keto acid-binding periplasmic protein TakP Cereibacter sphaeroides (strain ATCC 17023 / DSM 158 / JCM 6121 / CCUG 31486 / LMG 2827 / NBRC 12203 / NCIMB 8253 / ATH 2.4.1.)
Q8YSQ6 1.42e-05 50 23 7 287 1 all3028 Monocarboxylate 2-oxoacid-binding periplasmic protein all3028 Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
Q122C7 0.000784 44 31 6 162 1 Bpro_4736 Solute-binding protein Bpro_4736 Polaromonas sp. (strain JS666 / ATCC BAA-500)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS14255
Feature type CDS
Gene -
Product TRAP transporter substrate-binding protein
Location 70416 - 71396 (strand: -1)
Length 981 (nucleotides) / 326 (amino acids)

Contig

Accession term accessions NZ_VXKB01000004 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 258164 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2841
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF03480 Bacterial extracellular solute-binding protein, family 7

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1638 Carbohydrate transport and metabolism (G) G TRAP-type C4-dicarboxylate transport system, periplasmic component

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K21395 TRAP-type transport system periplasmic protein - -

Protein Sequence

MKNSKRIISTVIGALFALGASQAFAATTLKLSHNHNRDHAVHKAMVKFADDVKEKTQGEVRIRLYPDAQLGNQRESMELMQNGALDIVKSNAAELEAFSPAYSVFNLPYLFRDKPHYEKIIYGDIGQEILDSSQKSGFIGLTYYDAGARSFYAKKPIRTPADLKGLKIRVQPSPTAIAMVNALGGNPTPLAYGELYTALQQGVVDAAENNIPSYTLSRHNEVTKFFSLDEHTMVPDVLVMSTKSLDKLTPEQQVIVKQAAKDSAQVMAKLWATAEKEERAKVEKLGVEFITVDKVTFQDAVKPMYEEIAKSNPALSSMADRIRDVK

Flanking regions ( +/- flanking 50bp)

AAGGTACAAAGACATAATAAGAAACTTATCCCCCTCCGGAGATCCCTAACGTGAAAAACAGCAAACGTATCATCAGTACTGTTATCGGCGCTTTATTTGCTCTCGGCGCTTCTCAGGCTTTTGCCGCCACCACTCTGAAGCTCAGCCATAACCACAACCGCGATCACGCCGTTCATAAAGCAATGGTAAAATTCGCCGATGACGTAAAAGAAAAAACACAAGGTGAAGTCCGTATCCGCCTTTACCCGGATGCACAGTTAGGTAATCAGCGCGAATCCATGGAATTGATGCAAAACGGTGCGCTGGATATTGTGAAATCCAACGCGGCTGAACTGGAAGCTTTCTCTCCGGCTTATTCCGTCTTTAACCTGCCGTATCTGTTCCGTGATAAACCGCATTATGAAAAAATCATTTATGGCGATATCGGGCAGGAGATTCTGGATTCCAGCCAGAAAAGTGGCTTTATCGGTTTAACTTACTATGATGCGGGTGCACGCAGTTTCTATGCAAAGAAACCCATCCGTACCCCGGCTGATCTGAAAGGTCTGAAAATCCGCGTTCAGCCAAGCCCGACCGCTATTGCAATGGTAAATGCGCTGGGCGGAAACCCGACCCCGCTGGCATACGGTGAGCTTTACACTGCCCTGCAACAAGGAGTGGTGGATGCGGCAGAAAATAATATTCCGTCCTATACTCTGAGCCGTCACAATGAAGTCACCAAGTTCTTCTCACTCGATGAGCACACAATGGTGCCGGATGTATTAGTGATGTCGACAAAATCACTGGATAAACTGACACCGGAACAACAGGTAATCGTAAAGCAGGCGGCAAAAGATTCTGCACAGGTGATGGCAAAACTGTGGGCAACTGCAGAGAAAGAAGAACGTGCTAAAGTTGAAAAACTCGGTGTTGAATTTATCACGGTCGACAAAGTCACATTCCAGGATGCGGTAAAACCAATGTATGAAGAGATCGCGAAAAGTAATCCGGCCCTGTCTTCAATGGCTGATCGTATCCGCGACGTAAAATAATCTGAGTTGTATTTCTCATATACCCAACGTCATTCAAGATGCAGGCAGGC