Homologs in group_1584

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10335 FBDBKF_10335 91.0 Morganella morganii S1 uspB universal stress protein UspB
EHELCC_14670 EHELCC_14670 91.0 Morganella morganii S2 uspB universal stress protein UspB
NLDBIP_14500 NLDBIP_14500 91.0 Morganella morganii S4 uspB universal stress protein UspB
LHKJJB_14845 LHKJJB_14845 91.0 Morganella morganii S3 uspB universal stress protein UspB
HKOGLL_13465 HKOGLL_13465 91.0 Morganella morganii S5 uspB universal stress protein UspB
PMI_RS14885 PMI_RS14885 61.8 Proteus mirabilis HI4320 uspB universal stress protein UspB

Distribution of the homologs in the orthogroup group_1584

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1584

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P59988 5.37e-45 144 58 0 110 3 uspB Universal stress protein B Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
B1JHV1 4.87e-40 131 53 0 110 3 uspB Universal stress protein B Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
Q664F8 4.87e-40 131 53 0 110 3 uspB Universal stress protein B Yersinia pseudotuberculosis serotype I (strain IP32953)
A4TQX7 4.87e-40 131 53 0 110 3 uspB Universal stress protein B Yersinia pestis (strain Pestoides F)
Q1CDI5 4.87e-40 131 53 0 110 3 uspB Universal stress protein B Yersinia pestis bv. Antiqua (strain Nepal516)
Q8ZA50 4.87e-40 131 53 0 110 3 uspB Universal stress protein B Yersinia pestis
B2K6K2 4.87e-40 131 53 0 110 3 uspB Universal stress protein B Yersinia pseudotuberculosis serotype IB (strain PB1/+)
Q1C1B3 4.87e-40 131 53 0 110 3 uspB Universal stress protein B Yersinia pestis bv. Antiqua (strain Antiqua)
A7FP02 4.87e-40 131 53 0 110 3 uspB Universal stress protein B Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
A1JSP6 1.17e-39 130 54 0 110 3 uspB Universal stress protein B Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
Q6DB52 2.41e-39 130 51 0 110 3 uspB Universal stress protein B Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)
C5BB13 4.8e-39 129 52 0 111 3 uspB Universal stress protein B Edwardsiella ictaluri (strain 93-146)
Q3YW37 1.13e-38 128 52 0 111 3 uspB Universal stress protein B Shigella sonnei (strain Ss046)
P0A8S8 1.13e-38 128 52 0 111 3 uspB Universal stress protein B Shigella flexneri
Q0SZH0 1.13e-38 128 52 0 111 3 uspB Universal stress protein B Shigella flexneri serotype 5b (strain 8401)
Q32AW3 1.13e-38 128 52 0 111 3 uspB Universal stress protein B Shigella dysenteriae serotype 1 (strain Sd197)
Q31VD1 1.13e-38 128 52 0 111 3 uspB Universal stress protein B Shigella boydii serotype 4 (strain Sb227)
B2U3Q2 1.13e-38 128 52 0 111 3 uspB Universal stress protein B Shigella boydii serotype 18 (strain CDC 3083-94 / BS512)
Q1R5C2 1.13e-38 128 52 0 111 3 uspB Universal stress protein B Escherichia coli (strain UTI89 / UPEC)
B6I356 1.13e-38 128 52 0 111 3 uspB Universal stress protein B Escherichia coli (strain SE11)
B7NEC5 1.13e-38 128 52 0 111 3 uspB Universal stress protein B Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)
P0A8S5 1.13e-38 128 52 0 111 1 uspB Universal stress protein B Escherichia coli (strain K12)
B1J0D8 1.13e-38 128 52 0 111 3 uspB Universal stress protein B Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
P0A8S6 1.13e-38 128 52 0 111 3 uspB Universal stress protein B Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q0TBW9 1.13e-38 128 52 0 111 3 uspB Universal stress protein B Escherichia coli O6:K15:H31 (strain 536 / UPEC)
A1AH31 1.13e-38 128 52 0 111 3 uspB Universal stress protein B Escherichia coli O1:K1 / APEC
A8A5V1 1.13e-38 128 52 0 111 3 uspB Universal stress protein B Escherichia coli O9:H4 (strain HS)
B1X7U9 1.13e-38 128 52 0 111 3 uspB Universal stress protein B Escherichia coli (strain K12 / DH10B)
C4ZW41 1.13e-38 128 52 0 111 3 uspB Universal stress protein B Escherichia coli (strain K12 / MC4100 / BW2952)
B7M2Q4 1.13e-38 128 52 0 111 3 uspB Universal stress protein B Escherichia coli O8 (strain IAI1)
B7N1S8 1.13e-38 128 52 0 111 3 uspB Universal stress protein B Escherichia coli O81 (strain ED1a)
B7NNB6 1.13e-38 128 52 0 111 3 uspB Universal stress protein B Escherichia coli O7:K1 (strain IAI39 / ExPEC)
P0A8S7 1.13e-38 128 52 0 111 3 uspB Universal stress protein B Escherichia coli O157:H7
B7L5X4 1.13e-38 128 52 0 111 3 uspB Universal stress protein B Escherichia coli (strain 55989 / EAEC)
B7MEI9 1.13e-38 128 52 0 111 3 uspB Universal stress protein B Escherichia coli O45:K1 (strain S88 / ExPEC)
B7UL42 1.13e-38 128 52 0 111 3 uspB Universal stress protein B Escherichia coli O127:H6 (strain E2348/69 / EPEC)
A7ZT30 1.13e-38 128 52 0 111 3 uspB Universal stress protein B Escherichia coli O139:H28 (strain E24377A / ETEC)
A9MM62 1.15e-38 128 52 0 111 3 uspB Universal stress protein B Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
P67686 1.62e-38 127 52 0 111 3 uspB Universal stress protein B Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P67687 1.62e-38 127 52 0 111 3 uspB Universal stress protein B Salmonella typhi
B5BHN6 1.62e-38 127 52 0 111 3 uspB Universal stress protein B Salmonella paratyphi A (strain AKU_12601)
C0Q145 1.62e-38 127 52 0 111 3 uspB Universal stress protein B Salmonella paratyphi C (strain RKS4594)
Q5PJP1 1.62e-38 127 52 0 111 3 uspB Universal stress protein B Salmonella paratyphi A (strain ATCC 9150 / SARB42)
B5RGT6 1.62e-38 127 52 0 111 3 uspB Universal stress protein B Salmonella gallinarum (strain 287/91 / NCTC 13346)
B5R3Z1 1.62e-38 127 52 0 111 3 uspB Universal stress protein B Salmonella enteritidis PT4 (strain P125109)
Q57IN7 1.62e-38 127 52 0 111 3 uspB Universal stress protein B Salmonella choleraesuis (strain SC-B67)
A6TFB2 2.35e-38 127 52 0 111 3 uspB Universal stress protein B Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
B5XN50 2.35e-38 127 52 0 111 3 uspB Universal stress protein B Klebsiella pneumoniae (strain 342)
B7LSX5 3.41e-38 127 53 0 111 3 uspB Universal stress protein B Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73)
B2VHE5 1.5e-37 125 54 0 111 3 uspB Universal stress protein B Erwinia tasmaniensis (strain DSM 17950 / CFBP 7177 / CIP 109463 / NCPPB 4357 / Et1/99)
A7MKM3 2.88e-37 124 54 0 111 3 uspB Universal stress protein B Cronobacter sakazakii (strain ATCC BAA-894)
A8AR73 5.27e-37 124 51 0 111 3 uspB Universal stress protein B Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
A4WFT3 7.15e-37 124 51 0 111 3 uspB Universal stress protein B Enterobacter sp. (strain 638)
C6DJB7 1.66e-33 115 53 0 110 3 uspB Universal stress protein B Pectobacterium carotovorum subsp. carotovorum (strain PC1)
Q87TJ1 3.85e-21 84 37 0 101 3 uspB Universal stress protein B homolog Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
A7MTY8 1.55e-20 82 36 0 101 3 uspB Universal stress protein B homolog Vibrio campbellii (strain ATCC BAA-1116)
B7VHB5 1.35e-19 80 35 0 103 3 uspB Universal stress protein B homolog Vibrio atlanticus (strain LGP32)
C3LPS1 2.75e-18 76 36 0 96 3 uspB Universal stress protein B homolog Vibrio cholerae serotype O1 (strain M66-2)
Q9KVR0 2.75e-18 76 36 0 96 3 uspB Universal stress protein B homolog Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
A5F4E9 2.75e-18 76 36 0 96 3 uspB Universal stress protein B homolog Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
Q7MQD2 3.04e-17 73 30 0 101 3 uspB Universal stress protein B homolog Vibrio vulnificus (strain YJ016)
Q8DD90 3.04e-17 73 30 0 101 3 uspB Universal stress protein B homolog Vibrio vulnificus (strain CMCP6)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS14035
Feature type CDS
Gene uspB
Product universal stress protein UspB
Location 17394 - 17729 (strand: 1)
Length 336 (nucleotides) / 111 (amino acids)

Contig

Accession term accessions NZ_VXKB01000004 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 258164 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1584
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF10625 Universal stress protein B (UspB)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K06144 universal stress protein B - -

Protein Sequence

MFSIATLFWALCFLCLINMIRFYSSIRALLSVLRECDPLLYHAVGGNNAFTDYTQWQKQLRLIRYINQREYLTHHDPEVVLRCGRIHRQFTMISAICGIVIASLLMMLIWQ

Flanking regions ( +/- flanking 50bp)

AACACTGATATCACCGGTTCCTTCTCCGCGGATAGTCTGAGGGGTGGATTATGTTCAGCATCGCTACACTGTTCTGGGCGTTATGTTTTCTTTGCCTGATTAACATGATCCGGTTTTATTCTTCAATCCGGGCCTTGCTCTCTGTTCTGCGTGAGTGTGATCCTCTGCTTTACCACGCGGTCGGCGGTAATAATGCTTTTACGGATTATACTCAGTGGCAGAAACAATTGCGCCTTATCCGCTATATTAATCAGCGGGAATATCTCACTCATCATGATCCTGAGGTCGTTTTACGCTGCGGGCGTATTCACCGCCAGTTTACGATGATCAGTGCGATATGCGGTATTGTGATAGCCTCATTACTGATGATGCTTATCTGGCAGTGAAACAAAAAAGAAGAAAAAACAAAAAAAGCCTGACGGCTGCTGCCGTCAGG