Homologs in group_4158

Help

0 homologs were identified in 0 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product

Distribution of the homologs in the orthogroup group_4158

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_4158

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q08022 1.71e-23 104 25 7 377 3 yjgN Inner membrane protein YjgN Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P58219 1.44e-10 65 27 2 149 3 yjgN Inner membrane protein YjgN Escherichia coli O157:H7
P39338 8.26e-08 57 26 2 149 1 yjgN Inner membrane protein YjgN Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS13615
Feature type CDS
Gene -
Product YjgN family protein
Location 357325 - 358530 (strand: -1)
Length 1206 (nucleotides) / 401 (amino acids)

Contig

Accession term accessions NZ_VXKB01000003 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 425895 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_4158
Orthogroup size 1
N. genomes 1

Actions

Genomic region

Domains

PF05987 Bacterial protein of unknown function (DUF898)

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG4269 Function unknown (S) S Uncharacterized membrane protein YjgN, DUF898 family

Protein Sequence

MDDNIALSTDAFNKQKSLLPDQTINNVIFHGKTGDYFSLWLKNIIFCILTLGIYLPWAMVSRRRYFMNATEINHTRFEYHAKPTEILFGFILTGVLLLLIPVLTSVSPTLGLLMMLVVIILMPYALIRLWHFNVRNTSFREHRFAYQCHYMRLYLVVLILPVLLLVVTMVCSVMFSQWYVKVSTGPAVDDVFSLMLTTSVIPLTGLFLIWSVQGKQLCELLVNNLSYNKTAFSLSLSYKRLMLISLITVLLLSPFVAAGFSQLSDLTFLMMIPQEMWTENLRAMVIIKISLFYLLFFCGAMTAGIYFRVSCWTYVINSMTLGNLRFRCNMTYLSYLFLILSNFLLIICTLGFGSAYADIRHARYLARHICIVGDMDSISDSNKSEIQADRSRYDNVVVSVD

Flanking regions ( +/- flanking 50bp)

AAGTTAAATGTCATAATCGGGCTACGCTATAAATTTATGGGATATCATGGATGGACGATAATATTGCACTGAGTACCGACGCGTTTAATAAACAAAAATCACTGCTGCCTGATCAAACGATTAATAATGTGATATTCCACGGAAAGACCGGTGATTATTTCTCACTCTGGCTGAAAAATATCATATTTTGCATACTGACTTTAGGTATTTACCTCCCCTGGGCGATGGTCAGTCGCCGGCGTTATTTTATGAATGCCACTGAAATTAACCATACCCGCTTTGAATATCATGCAAAACCGACAGAAATTTTATTCGGTTTTATTCTTACCGGCGTATTGCTGCTGCTTATCCCGGTTTTAACATCGGTATCTCCGACATTGGGATTACTGATGATGCTTGTTGTTATTATCCTGATGCCTTACGCCCTGATCCGGTTGTGGCATTTTAATGTACGTAATACGTCCTTCCGGGAACACCGTTTCGCCTACCAGTGTCATTACATGCGCCTTTATTTGGTGGTATTAATTCTTCCGGTTCTGCTGCTTGTCGTGACAATGGTGTGCAGCGTGATGTTTTCGCAGTGGTATGTAAAAGTATCCACCGGACCGGCGGTTGATGATGTATTCAGCCTGATGCTGACGACCAGTGTCATACCGTTGACCGGATTATTTCTTATCTGGTCGGTGCAGGGCAAACAGCTTTGTGAATTACTGGTTAATAATCTTTCATATAACAAAACTGCATTTTCACTCAGCCTGTCGTATAAACGGCTGATGCTGATAAGCCTGATCACGGTATTATTGTTATCGCCGTTTGTGGCAGCCGGGTTTTCACAACTGAGTGACCTGACTTTTCTGATGATGATCCCGCAGGAAATGTGGACAGAAAATCTCCGCGCGATGGTGATAATAAAAATTTCGCTGTTCTATCTGTTGTTTTTTTGCGGTGCGATGACTGCCGGTATCTATTTCCGGGTGTCCTGCTGGACATATGTTATTAATTCAATGACTCTGGGCAATCTGCGCTTTCGCTGTAATATGACGTATCTGTCTTATTTATTTCTGATCCTGAGTAATTTCCTGCTGATAATATGTACCCTGGGATTTGGCTCCGCTTACGCCGATATCCGTCATGCCCGTTATCTGGCACGGCATATTTGTATTGTTGGTGATATGGATAGTATTTCAGACAGTAATAAAAGTGAAATACAGGCAGACCGCAGCCGTTATGATAATGTCGTGGTTTCTGTGGACTGACAGGCTATAAACGCCGCCACTGTAAGTGCGGTACGGTAATACATATTATC