Homologs in group_2027

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_15200 FBDBKF_15200 75.2 Morganella morganii S1 crl sigma factor-binding protein Crl
EHELCC_11045 EHELCC_11045 75.2 Morganella morganii S2 crl sigma factor-binding protein Crl
NLDBIP_11390 NLDBIP_11390 75.2 Morganella morganii S4 crl sigma factor-binding protein Crl
LHKJJB_11250 LHKJJB_11250 75.2 Morganella morganii S3 crl sigma factor-binding protein Crl
HKOGLL_09860 HKOGLL_09860 75.2 Morganella morganii S5 crl sigma factor-binding protein Crl
PMI_RS01760 PMI_RS01760 47.7 Proteus mirabilis HI4320 crl sigma factor-binding protein Crl

Distribution of the homologs in the orthogroup group_2027

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2027

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
A8AKP8 3.39e-41 136 49 0 129 3 crl Sigma factor-binding protein Crl Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
B1JIH4 5.29e-41 135 47 1 130 3 crl Sigma factor-binding protein Crl Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
Q66DZ0 5.29e-41 135 47 1 130 3 crl Sigma factor-binding protein Crl Yersinia pseudotuberculosis serotype I (strain IP32953)
Q1CLC8 5.29e-41 135 47 1 130 3 crl Sigma factor-binding protein Crl Yersinia pestis bv. Antiqua (strain Nepal516)
A9R2X2 5.29e-41 135 47 1 130 3 crl Sigma factor-binding protein Crl Yersinia pestis bv. Antiqua (strain Angola)
Q7CK59 5.29e-41 135 47 1 130 3 crl Sigma factor-binding protein Crl Yersinia pestis
B2K6Q2 5.29e-41 135 47 1 130 3 crl Sigma factor-binding protein Crl Yersinia pseudotuberculosis serotype IB (strain PB1/+)
Q1C4E5 5.29e-41 135 47 1 130 3 crl Sigma factor-binding protein Crl Yersinia pestis bv. Antiqua (strain Antiqua)
A9MNR7 2.98e-40 134 49 1 130 3 crl Sigma factor-binding protein Crl Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
A7FLI3 4.13e-40 133 46 1 130 3 crl Sigma factor-binding protein Crl Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
Q57ST5 8.22e-40 132 49 1 130 3 crl Sigma factor-binding protein Crl Salmonella choleraesuis (strain SC-B67)
B4TZ87 1.48e-39 132 48 1 130 3 crl Sigma factor-binding protein Crl Salmonella schwarzengrund (strain CVM19633)
C0Q6T8 3.52e-39 131 48 1 130 3 crl Sigma factor-binding protein Crl Salmonella paratyphi C (strain RKS4594)
B4SVW1 3.52e-39 131 48 1 130 3 crl Sigma factor-binding protein Crl Salmonella newport (strain SL254)
B5R5R6 3.52e-39 131 48 1 130 3 crl Sigma factor-binding protein Crl Salmonella gallinarum (strain 287/91 / NCTC 13346)
B5R4S3 3.52e-39 131 48 1 130 3 crl Sigma factor-binding protein Crl Salmonella enteritidis PT4 (strain P125109)
B5FJX1 3.52e-39 131 48 1 130 3 crl Sigma factor-binding protein Crl Salmonella dublin (strain CT_02021853)
B5EWK2 3.52e-39 131 48 1 130 3 crl Sigma factor-binding protein Crl Salmonella agona (strain SL483)
A4TPK2 4.33e-39 131 46 1 130 3 crl Sigma factor-binding protein Crl Yersinia pestis (strain Pestoides F)
Q7CR52 6.92e-39 130 48 1 129 1 crl Sigma factor-binding protein Crl Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8XH11 6.92e-39 130 48 1 129 3 crl Sigma factor-binding protein Crl Salmonella typhi
B5BDQ0 6.92e-39 130 48 1 129 3 crl Sigma factor-binding protein Crl Salmonella paratyphi A (strain AKU_12601)
Q5PF66 6.92e-39 130 48 1 129 3 crl Sigma factor-binding protein Crl Salmonella paratyphi A (strain ATCC 9150 / SARB42)
B4T7Q2 6.92e-39 130 48 1 129 3 crl Sigma factor-binding protein Crl Salmonella heidelberg (strain SL476)
Q32J23 3.16e-38 129 48 1 130 3 crl Sigma factor-binding protein Crl Shigella dysenteriae serotype 1 (strain Sd197)
Q8FKM4 3.97e-38 128 47 1 130 3 crl Sigma factor-binding protein Crl Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
B7N8H1 4.89e-38 128 47 1 130 3 crl Sigma factor-binding protein Crl Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)
Q1RFT0 7.41e-38 127 48 1 129 3 crl Sigma factor-binding protein Crl Escherichia coli (strain UTI89 / UPEC)
Q0TL76 7.41e-38 127 48 1 129 3 crl Sigma factor-binding protein Crl Escherichia coli O6:K15:H31 (strain 536 / UPEC)
A1A7V1 7.41e-38 127 48 1 129 3 crl Sigma factor-binding protein Crl Escherichia coli O1:K1 / APEC
B7MQ76 7.41e-38 127 48 1 129 3 crl Sigma factor-binding protein Crl Escherichia coli O81 (strain ED1a)
B7MC90 7.41e-38 127 48 1 129 3 crl Sigma factor-binding protein Crl Escherichia coli O45:K1 (strain S88 / ExPEC)
A4W6X2 1.34e-37 127 45 1 130 3 crl Sigma factor-binding protein Crl Enterobacter sp. (strain 638)
B7LNG0 1.4e-37 127 48 1 129 3 crl Sigma factor-binding protein Crl Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73)
B1LHT6 1.51e-37 127 48 1 129 3 crl Sigma factor-binding protein Crl Escherichia coli (strain SMS-3-5 / SECEC)
Q3Z597 1.94e-37 127 47 1 130 3 crl Sigma factor-binding protein Crl Shigella sonnei (strain Ss046)
Q0T7R1 1.94e-37 127 47 1 130 3 crl Sigma factor-binding protein Crl Shigella flexneri serotype 5b (strain 8401)
Q325P6 1.94e-37 127 47 1 130 3 crl Sigma factor-binding protein Crl Shigella boydii serotype 4 (strain Sb227)
B2U3T1 1.94e-37 127 47 1 130 3 crl Sigma factor-binding protein Crl Shigella boydii serotype 18 (strain CDC 3083-94 / BS512)
B6I020 1.94e-37 127 47 1 130 3 crl Sigma factor-binding protein Crl Escherichia coli (strain SE11)
B1J0Z4 1.94e-37 127 47 1 130 3 crl Sigma factor-binding protein Crl Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
A7ZWK3 1.94e-37 127 47 1 130 3 crl Sigma factor-binding protein Crl Escherichia coli O9:H4 (strain HS)
B7M269 1.94e-37 127 47 1 130 3 crl Sigma factor-binding protein Crl Escherichia coli O8 (strain IAI1)
B7L3Z2 1.94e-37 127 47 1 130 3 crl Sigma factor-binding protein Crl Escherichia coli (strain 55989 / EAEC)
A7ZHZ9 1.94e-37 127 47 1 130 3 crl Sigma factor-binding protein Crl Escherichia coli O139:H28 (strain E24377A / ETEC)
Q83SI1 2.11e-37 126 47 1 130 3 crl Sigma factor-binding protein Crl Shigella flexneri
P24251 2.18e-37 126 47 1 130 1 crl Sigma factor-binding protein Crl Escherichia coli (strain K12)
B1XDY3 2.18e-37 126 47 1 130 3 crl Sigma factor-binding protein Crl Escherichia coli (strain K12 / DH10B)
C4ZT97 2.18e-37 126 47 1 130 3 crl Sigma factor-binding protein Crl Escherichia coli (strain K12 / MC4100 / BW2952)
B7NK85 3.27e-37 126 47 1 130 3 crl Sigma factor-binding protein Crl Escherichia coli O7:K1 (strain IAI39 / ExPEC)
B7UJC8 3.27e-37 126 47 1 130 3 crl Sigma factor-binding protein Crl Escherichia coli O127:H6 (strain E2348/69 / EPEC)
A1JNX8 4.49e-37 125 46 1 128 3 crl Sigma factor-binding protein Crl Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
B5Z1I4 7.92e-37 125 47 1 129 3 crl Sigma factor-binding protein Crl Escherichia coli O157:H7 (strain EC4115 / EHEC)
Q8X7N6 7.92e-37 125 47 1 129 3 crl Sigma factor-binding protein Crl Escherichia coli O157:H7
Q6D1I2 9.52e-35 119 47 1 123 3 crl Sigma factor-binding protein Crl Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)
A8GAD2 1.46e-33 117 43 0 122 3 crl Sigma factor-binding protein Crl Serratia proteamaculans (strain 568)
Q87RV1 7.84e-29 105 43 1 114 3 crl Sigma factor-binding protein Crl Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Q6LTX4 1.5e-28 104 42 2 117 3 crl Sigma factor-binding protein Crl Photobacterium profundum (strain SS9)
Q7MN60 3.96e-26 98 40 1 114 3 crl Sigma factor-binding protein Crl Vibrio vulnificus (strain YJ016)
Q8DF92 3.96e-26 98 40 1 114 3 crl Sigma factor-binding protein Crl Vibrio vulnificus (strain CMCP6)
C3LQ47 2.89e-25 95 39 2 128 3 crl Sigma factor-binding protein Crl Vibrio cholerae serotype O1 (strain M66-2)
Q9KPT7 2.89e-25 95 39 2 128 3 crl Sigma factor-binding protein Crl Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
A5F604 2.89e-25 95 39 2 128 3 crl Sigma factor-binding protein Crl Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS12245
Feature type CDS
Gene crl
Product sigma factor-binding protein Crl
Location 33216 - 33617 (strand: -1)
Length 402 (nucleotides) / 133 (amino acids)

Contig

Accession term accessions NZ_VXKB01000003 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 425895 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2027
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF07417 Sigma factor-binding transcriptional regulator Crl

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11926 sigma factor-binding protein Crl - -

Protein Sequence

MSVLVSDYTRGKLLRCFTALGPYIREPQCQDGHYFFDCLAVCVNADAAPEKREFYGWWLILTPQEQGFVSEYRLGIFDKAGHWQENKLSRKETHDTVCKTLTTFHPRLRAVLCELGLTLTPSPETPPPVKLPE

Flanking regions ( +/- flanking 50bp)

ATTCCTGTCTGTTTGCTACAAATAAGCCTCCACTGAAAGGAGGCTTAACGATGTCGGTACTGGTTTCAGATTATACGCGCGGTAAATTGCTGCGCTGTTTTACCGCTTTGGGTCCGTACATCCGTGAACCACAGTGTCAGGACGGACACTACTTTTTCGACTGTCTGGCAGTGTGTGTCAACGCCGATGCCGCCCCGGAAAAACGGGAGTTTTATGGCTGGTGGCTTATTCTCACCCCGCAGGAGCAGGGCTTTGTATCTGAATACCGCCTCGGGATATTTGATAAAGCCGGTCACTGGCAGGAAAATAAACTGTCCCGTAAAGAGACGCATGATACGGTCTGTAAAACACTGACGACTTTTCATCCCCGTCTGCGGGCAGTTCTCTGTGAGCTGGGTCTGACACTCACTCCGTCACCGGAAACGCCTCCCCCCGTTAAATTGCCGGAATAATTTCCGGATCTGCGTTATGCCTGTTGGCATAGCGCGCATCACCTGTTAAA