Homologs in group_2616

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_03675 FBDBKF_03675 30.6 Morganella morganii S1 - hypothetical protein
EHELCC_06860 EHELCC_06860 30.6 Morganella morganii S2 - hypothetical protein
NLDBIP_07185 NLDBIP_07185 30.6 Morganella morganii S4 - hypothetical protein
LHKJJB_06720 LHKJJB_06720 30.6 Morganella morganii S3 - hypothetical protein
HKOGLL_04210 HKOGLL_04210 30.6 Morganella morganii S5 - hypothetical protein

Distribution of the homologs in the orthogroup group_2616

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2616

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q04314 1.13e-08 57 30 4 159 4 ipgB Protein IpgB Shigella dysenteriae
P33548 1.18e-08 57 44 1 67 4 ipgB Protein IpgB Shigella flexneri

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS11195
Feature type CDS
Gene -
Product hypothetical protein
Location 378500 - 379441 (strand: -1)
Length 942 (nucleotides) / 313 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2616
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF03278 IpaB/EvcA family

Protein Sequence

MRMSDIPGYQVNIEIPSPKIEGKILNSLNFKKLSERINYIQNTTMKFNLNKNTLTTDTRELSKNILITVSRTNIPMIKPGEIPDSDFISRTEKNLNQGIKKWIEQERTTFISAFINRTIDQTCRGNHAKIGSDAKKNLFNEIHNEYFKNEKLDCRCANSSILQTILNDNDLNKKIININIDSAIPDEIENIMLMKMDEIINNIKNQKSDIEVIQNKQKELASFQGLYKTALLTERMSVRSDIYHSISENIFNTLLCDKFYGENSGAVKFDEVREEIKNRVLLKSTPITNTPRFFFSDAHLSVTTKTPDDSNNK

Flanking regions ( +/- flanking 50bp)

AATAAAAATAGACATAATTAAGAATCAAACAATATAATGAGGATGACAAGATGAGAATGAGTGATATTCCGGGATACCAGGTAAACATTGAAATACCATCACCTAAAATTGAAGGTAAAATATTAAACTCACTTAATTTTAAAAAATTATCTGAAAGAATAAATTACATTCAAAACACAACCATGAAATTCAACCTTAATAAAAACACATTAACAACCGATACAAGGGAACTTAGTAAAAACATACTGATAACAGTCAGCAGAACAAATATACCGATGATAAAACCAGGTGAAATACCGGATAGCGATTTTATATCACGTACAGAAAAAAACTTAAATCAAGGTATAAAAAAGTGGATTGAACAAGAAAGAACTACGTTTATCTCAGCATTTATCAACCGGACCATCGACCAAACGTGCAGAGGAAACCACGCAAAAATTGGTAGTGATGCTAAAAAAAATCTATTTAATGAGATACATAACGAATACTTTAAGAATGAAAAACTTGATTGCAGATGTGCAAATTCATCGATACTTCAGACAATACTCAATGACAACGATCTGAATAAAAAAATAATCAATATAAATATAGACAGCGCCATTCCTGATGAAATTGAAAATATAATGCTAATGAAAATGGATGAAATCATAAATAATATTAAAAATCAAAAATCAGATATTGAAGTCATACAAAACAAGCAAAAAGAACTGGCAAGCTTTCAGGGATTATATAAAACAGCATTATTAACAGAAAGAATGTCAGTCAGATCTGATATTTATCATAGTATATCTGAAAACATATTCAATACATTATTATGTGATAAATTTTATGGTGAAAACTCCGGTGCGGTTAAATTTGATGAAGTAAGAGAAGAGATCAAAAATAGGGTGCTTTTAAAATCAACCCCGATAACAAACACACCACGTTTCTTTTTCTCTGATGCTCATCTTTCTGTTACTACAAAAACGCCTGATGACAGTAACAATAAGTGAAATAATAATATAAATATTAATCAGAAAAGATATTCATGTTCTATGTTTCT