Homologs in group_1423

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08785 FBDBKF_08785 94.1 Morganella morganii S1 nrdD anaerobic ribonucleoside-triphosphate reductase
EHELCC_12740 EHELCC_12740 94.1 Morganella morganii S2 nrdD anaerobic ribonucleoside-triphosphate reductase
NLDBIP_13080 NLDBIP_13080 94.1 Morganella morganii S4 nrdD anaerobic ribonucleoside-triphosphate reductase
LHKJJB_13475 LHKJJB_13475 94.1 Morganella morganii S3 nrdD anaerobic ribonucleoside-triphosphate reductase
HKOGLL_11555 HKOGLL_11555 94.1 Morganella morganii S5 nrdD anaerobic ribonucleoside-triphosphate reductase
PMI_RS17200 PMI_RS17200 85.1 Proteus mirabilis HI4320 nrdD anaerobic ribonucleoside-triphosphate reductase

Distribution of the homologs in the orthogroup group_1423

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1423

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q9L646 0.0 1278 84 2 713 3 nrdD Anaerobic ribonucleoside-triphosphate reductase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P28903 0.0 1278 84 2 713 1 nrdD Anaerobic ribonucleoside-triphosphate reductase Escherichia coli (strain K12)
P43752 0.0 1161 77 3 704 3 nrdD Anaerobic ribonucleoside-triphosphate reductase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P07071 0.0 704 54 6 615 1 nrdD Anaerobic ribonucleoside-triphosphate reductase Enterobacteria phage T4
Q58242 1.19e-11 72 26 9 265 4 MJ0832 Uncharacterized protein MJ0832 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q58242 1.55e-06 55 29 4 117 4 MJ0832 Uncharacterized protein MJ0832 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q58242 9.27e-05 50 27 7 167 4 MJ0832 Uncharacterized protein MJ0832 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q9HI70 5.85e-07 56 35 2 100 1 Ta1475 Vitamin B12-dependent ribonucleoside-diphosphate reductase Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
E7FHX6 2.18e-06 55 36 1 100 1 rnr Vitamin B12-dependent ribonucleoside-diphosphate reductase Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
P9WH76 1.48e-05 52 36 1 84 2 nrdZ Vitamin B12-dependent ribonucleoside-diphosphate reductase Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P9WH77 1.59e-05 52 36 1 84 1 nrdZ Vitamin B12-dependent ribonucleoside-diphosphate reductase Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Q9Z6S5 0.000112 49 36 3 91 3 nrdA Ribonucleoside-diphosphate reductase subunit alpha Chlamydia pneumoniae
Q9PL93 0.00035 47 31 2 102 3 nrdA Ribonucleoside-diphosphate reductase subunit alpha Chlamydia muridarum (strain MoPn / Nigg)
O84834 0.000497 47 31 2 102 3 nrdA Ribonucleoside-diphosphate reductase subunit alpha Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS10000
Feature type CDS
Gene nrdD
Product anaerobic ribonucleoside-triphosphate reductase
Location 104166 - 106304 (strand: -1)
Length 2139 (nucleotides) / 712 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1423
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF03477 ATP cone domain
PF13597 Anaerobic ribonucleoside-triphosphate reductase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1328 Nucleotide transport and metabolism (F) F Anaerobic ribonucleoside-triphosphate reductase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K21636 ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] Purine metabolism
Pyrimidine metabolism
Metabolic pathways
Nucleotide metabolism		 -

Protein Sequence

MHTIVIKRDGCQVNFDESRIRDAIKKAAEAAQINDNDYCSQVASHVTSLMKNRENVDIREIQDAVENQLMSGDYKELARTYIEYRHDRDVERELRGRLNNEIRGLVEQSDMSILNENANKDSKVIPTQRDLLAGIVAKHYAKQHILPRDVVISHERGEIHYHDLDYAPFFPMFNCMLIDLKGMLTHGFKMGNAEIEQPKSISTATAVTAQIIAQVASHIYGGTTINRIDEILAPFVAASYNKHLKTAEEWQIPDAKGYADSRTEKECYDAFQSLEYEVNTLHTANGQTPFVTFGFGLGTSKESRMIQQAILRNRIAGLGKNHKTAVFPKLVFAIKKGLNHQYGDPNYDIKRLALECASKRMYPDILNYDQVVKVTGSFKTPMGCRSFLGVYEENGEQIHDGRNNLGVISLNLPRIAIEAHTDVEQFWTLLDERLLIAKKALMTRIARLENVKARVAPILYMEGACGVRLKADDSVTEIFKNGRASISLGYIGIHETINALAGTDTHMYDDEQQRALGVAIIERLRRATDEWKTETGYAFSLYSTPSENLCDRFCRLDTAEFGVIPGVTDKGYYTNSFHLDVEKKVNPYDKLDFEAPYPPLANGGFICYGEYPNLQHNLKALEDVWDYSYDRVPYYGTNTPIDECYECGFNGEFNCTSKGFVCPKCGNHDAARVSVIRRVCGYLGSPDARPFNAGKQEEVKRRVKHLSNGQLG

Flanking regions ( +/- flanking 50bp)

TTATTGCTGGCTTTTGCCTGTGGATAACCAAATTTCCGGAGAGAAGCAAAGTGCACACTATCGTGATTAAGCGTGATGGATGTCAGGTCAATTTTGATGAATCGCGCATCCGGGATGCCATTAAAAAAGCAGCTGAAGCCGCGCAAATTAATGATAATGACTACTGCTCTCAGGTGGCGTCTCATGTCACTTCGTTAATGAAAAACCGGGAAAATGTTGATATCCGTGAAATTCAGGACGCGGTTGAAAATCAGTTAATGTCAGGTGATTACAAAGAGTTAGCAAGAACCTACATCGAATACCGCCATGATCGTGATGTCGAGCGTGAGCTGCGTGGACGTCTGAATAATGAGATCCGCGGGCTGGTCGAGCAAAGTGATATGTCCATTCTCAATGAGAATGCTAATAAAGACAGCAAAGTTATTCCGACACAGCGCGACCTGCTGGCGGGCATTGTGGCTAAACACTATGCAAAACAGCACATTTTACCGCGTGATGTTGTAATTTCACACGAACGTGGTGAAATCCACTATCACGATCTGGATTACGCGCCATTCTTTCCGATGTTTAACTGTATGCTGATCGATTTAAAAGGCATGCTGACTCATGGCTTTAAAATGGGTAACGCCGAGATAGAGCAGCCTAAGTCCATCTCTACCGCGACTGCGGTAACAGCACAAATTATCGCGCAGGTTGCCAGCCATATTTACGGCGGCACCACCATTAACCGGATTGATGAAATTCTGGCTCCATTTGTCGCCGCCAGCTACAACAAACATCTGAAAACGGCTGAAGAATGGCAAATTCCTGATGCAAAAGGTTACGCCGATTCCCGCACCGAAAAAGAGTGCTATGACGCCTTTCAGTCACTGGAATATGAAGTCAACACCCTGCACACGGCCAACGGACAAACCCCGTTTGTCACCTTTGGTTTCGGGCTGGGAACCTCCAAAGAATCCCGTATGATCCAACAGGCGATTTTGCGCAACCGTATTGCCGGGCTGGGTAAAAATCATAAAACAGCGGTCTTCCCGAAACTGGTGTTTGCCATTAAAAAAGGGCTGAATCATCAGTACGGCGACCCGAATTATGACATCAAACGCCTTGCATTAGAGTGCGCCAGCAAGCGCATGTATCCGGATATTCTGAACTACGACCAGGTCGTAAAAGTGACCGGTTCGTTTAAAACGCCGATGGGCTGCCGCAGTTTCCTCGGTGTATACGAAGAGAACGGCGAACAAATTCATGATGGTCGTAATAACCTCGGGGTTATCAGCCTGAACCTGCCGCGTATTGCGATTGAAGCGCACACCGACGTAGAACAGTTCTGGACGCTGCTGGATGAACGCCTGCTGATTGCCAAAAAAGCACTGATGACCCGAATTGCCCGGCTGGAAAATGTCAAAGCCCGCGTCGCGCCTATCCTGTATATGGAAGGCGCCTGCGGCGTGCGGCTGAAAGCGGATGACTCCGTAACAGAGATCTTTAAAAACGGTCGCGCATCCATTTCCCTGGGTTATATCGGCATCCACGAAACCATTAATGCGCTGGCGGGTACCGATACCCACATGTATGACGACGAGCAGCAGCGCGCGCTGGGTGTGGCTATTATTGAACGTTTACGCCGTGCGACAGATGAATGGAAAACAGAAACCGGCTACGCCTTCAGTCTGTACAGCACACCAAGTGAGAATCTGTGCGATCGCTTCTGCCGTCTGGATACCGCTGAGTTCGGCGTAATCCCGGGCGTGACAGACAAAGGCTATTACACCAACAGCTTCCATCTTGATGTTGAGAAAAAAGTTAATCCGTACGACAAACTGGATTTTGAAGCCCCGTATCCGCCACTGGCGAACGGCGGTTTTATCTGTTACGGCGAATACCCGAACCTTCAGCACAACCTGAAAGCCCTGGAAGATGTCTGGGACTACAGTTATGACCGCGTTCCGTATTATGGCACCAACACACCGATTGATGAGTGTTATGAATGTGGCTTTAACGGGGAATTTAACTGTACCAGCAAAGGGTTTGTCTGCCCGAAATGCGGCAACCATGATGCCGCCCGCGTGTCTGTGATCCGCCGTGTCTGCGGTTATCTCGGCAGCCCGGATGCACGTCCGTTCAATGCCGGGAAGCAGGAAGAAGTAAAACGCCGCGTGAAACATCTGTCAAACGGGCAGTTAGGCTGAGTATATGAATTATCATCAGTACTATCCCGTTGATGTCGTCAACGGGCCGG