Homologs in group_904

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_04770 FBDBKF_04770 88.9 Morganella morganii S1 agaF PTS galactosamine/N-acetylgalactosamine transporter subunit IIA
EHELCC_06060 EHELCC_06060 88.9 Morganella morganii S2 agaF PTS galactosamine/N-acetylgalactosamine transporter subunit IIA
NLDBIP_06380 NLDBIP_06380 88.9 Morganella morganii S4 agaF PTS galactosamine/N-acetylgalactosamine transporter subunit IIA
LHKJJB_03260 LHKJJB_03260 88.9 Morganella morganii S3 agaF PTS galactosamine/N-acetylgalactosamine transporter subunit IIA
HKOGLL_06735 HKOGLL_06735 88.9 Morganella morganii S5 agaF PTS galactosamine/N-acetylgalactosamine transporter subunit IIA
PMI_RS10520 PMI_RS10520 28.7 Proteus mirabilis HI4320 agaF PTS galactosamine/N-acetylgalactosamine transporter subunit IIA

Distribution of the homologs in the orthogroup group_904

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_904

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P26379 2.22e-14 68 27 0 137 1 levD PTS system fructose-specific EIIA component Bacillus subtilis (strain 168)
Q9RGG5 4.22e-13 65 29 1 128 1 sorA PTS system sorbose-specific EIIA component Lacticaseibacillus casei
P69800 4.1e-12 65 30 1 126 3 manX PTS system mannose-specific EIIAB component Shigella flexneri
P69797 4.1e-12 65 30 1 126 1 manX PTS system mannose-specific EIIAB component Escherichia coli (strain K12)
P69798 4.1e-12 65 30 1 126 3 manX PTS system mannose-specific EIIAB component Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P69799 4.1e-12 65 30 1 126 3 manX PTS system mannose-specific EIIAB component Escherichia coli O157:H7
P36881 5.34e-11 60 32 0 102 3 yadI Putative phosphotransferase enzyme IIA component YadI Escherichia coli (strain K12)
Q5XAF5 8.92e-11 61 30 1 104 1 manX PTS system mannose-specific EIIAB component Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394)
P37080 0.000125 42 26 2 115 1 sorF PTS system sorbose-specific EIIA component Klebsiella pneumoniae

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS09240
Feature type CDS
Gene agaF
Product PTS galactosamine/N-acetylgalactosamine transporter subunit IIA
Location 1935310 - 1935744 (strand: 1)
Length 435 (nucleotides) / 144 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_904
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF03610 PTS system fructose IIA component

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2893 Carbohydrate transport and metabolism (G) G Phosphotransferase system, mannose/fructose-specific component IIA

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02744 N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-] Galactose metabolism
Metabolic pathways
Phosphotransferase system (PTS)		 -

Protein Sequence

MPGIILCGHGGFASGLEKAMLQIIGEQDDFIAIDFPAESTTHRLTQELEAALEQLKQCDSVIFLTDILGGTPFRVSATLSQGRTDREVITGTNLQLLLEMSLERDTLSPDDFRREALACGHRGLTSLTDELQRARCCETEDEGI

Flanking regions ( +/- flanking 50bp)

GCCGGGAAATTTGCACACTTCCTGTAAACAGAAATATAAAGGAGAGACTGATGCCGGGAATTATTTTATGTGGTCACGGAGGTTTTGCCTCCGGACTGGAAAAAGCCATGCTGCAAATCATCGGGGAACAGGACGATTTCATTGCCATTGATTTCCCGGCTGAATCCACCACCCACCGTCTGACGCAGGAACTGGAAGCCGCACTGGAACAACTGAAACAGTGTGACAGTGTGATTTTTCTGACGGATATTCTTGGCGGAACACCGTTCCGGGTATCCGCCACACTGTCACAGGGACGGACAGACCGCGAGGTGATCACCGGCACTAATCTGCAATTACTGCTGGAGATGTCACTGGAGCGGGATACTCTCTCCCCTGATGATTTTCGCCGGGAAGCGCTGGCCTGCGGGCACCGTGGCTTAACCAGTCTGACCGATGAATTACAGCGGGCGCGCTGCTGTGAAACAGAGGACGAAGGTATATGACACAGCAGATCCGTGCCCGCAGAGTACTGACAGAATATGGCTGGCGTGAA