Homologs in group_4088

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0 homologs were identified in 0 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product

Distribution of the homologs in the orthogroup group_4088

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_4088

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS08400
Feature type CDS
Gene -
Product SctK family type III secretion system sorting platform protein
Location 1737182 - 1737805 (strand: 1)
Length 624 (nucleotides) / 207 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_4088
Orthogroup size 1
N. genomes 1

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Genomic region

Domains

PF06578 YOP proteins translocation protein K (YscK)

Protein Sequence

MNALTDFQFRFCPAIYCHSDHLNTLAQHRQLAELPAKHTQPLLNKRLFDHFSLTANTDELTDLQQAILLSDTELQRFLTFCGSCFYLRDLTTRWPVPGLRSPFIALTAEDAALLLRWKSGLLLPLQHCQRLLTNTSDDELIIHMTGQQLWFYLIQESSFQFRRRAELRFPATFFPPVPFPAELTPLLNTLCLTILHSLTQPACHSAV

Flanking regions ( +/- flanking 50bp)

TATTTCCTCACACCTGCTGCATTTTTTTCTGAACAAACGAAAACCCCGTCATGAACGCCCTGACTGATTTTCAGTTTCGTTTTTGCCCGGCCATTTATTGCCATTCGGATCATCTGAATACGCTTGCGCAGCATCGGCAACTTGCGGAGCTACCGGCTAAACATACACAACCACTGCTCAATAAACGGTTGTTTGACCATTTTTCACTTACGGCAAATACGGATGAGTTAACAGATTTACAGCAGGCGATATTACTCAGCGACACTGAATTACAACGTTTCCTGACCTTTTGCGGCAGTTGTTTTTATCTCAGGGATCTGACAACCCGCTGGCCGGTTCCCGGACTCCGGAGCCCGTTCATCGCACTGACAGCGGAAGATGCTGCGTTGCTGCTGCGCTGGAAGTCAGGATTGTTATTGCCCCTGCAACACTGTCAGCGCCTACTCACAAATACCTCTGATGATGAATTAATCATCCATATGACGGGTCAGCAATTGTGGTTTTATCTGATACAAGAGAGCAGTTTTCAGTTTCGCCGGCGGGCTGAACTGCGTTTTCCTGCAACCTTCTTCCCGCCGGTTCCTTTTCCTGCCGAACTGACACCATTACTGAATACATTATGCCTGACGATACTGCACTCCCTGACTCAACCAGCCTGCCACTCAGCCGTCTGACGACAGACTCTTATACTCTGACAACCGCGCCTTGTATTATCCGGGCAGCG