Homologs in group_2858

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10930 FBDBKF_10930 54.0 Morganella morganii S1 - Guanylate kinase
EHELCC_05295 EHELCC_05295 54.0 Morganella morganii S2 - Guanylate kinase
NLDBIP_05615 NLDBIP_05615 54.0 Morganella morganii S4 - Guanylate kinase
LHKJJB_02495 LHKJJB_02495 54.0 Morganella morganii S3 - Guanylate kinase
HKOGLL_15875 HKOGLL_15875 54.0 Morganella morganii S5 - Guanylate kinase

Distribution of the homologs in the orthogroup group_2858

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2858

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS08385
Feature type CDS
Gene -
Product YopR/YscH family type III secretion effector
Location 1735723 - 1736097 (strand: 1)
Length 375 (nucleotides) / 124 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2858
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF09025 YopR, type III needle-polymerisation regulator

Protein Sequence

MNEYVENETEEQKAEDSRQLLWQKLKHTTPESREYNVLCDNLLAPVISDLKKFSYAEKIDRETLSKILLNYDEYGVRQEFILSKLWQALPESLADSYLISLISTELNQQISVNNQLAFCQYNLR

Flanking regions ( +/- flanking 50bp)

AATAACGAATTAATGGCATTTGCCAAACAATTTGAAGAGGATTTATTTTTATGAATGAATATGTGGAAAATGAAACTGAAGAGCAGAAAGCAGAAGACAGCCGCCAGTTATTATGGCAAAAATTAAAACACACCACCCCGGAAAGCAGGGAATACAACGTGCTGTGTGATAATTTGCTGGCACCTGTTATTTCTGACCTGAAAAAATTCAGTTACGCGGAAAAAATTGACAGAGAAACATTATCAAAAATTTTATTAAACTATGATGAATATGGTGTCCGCCAGGAGTTTATTTTATCGAAGCTATGGCAGGCGTTACCGGAATCACTGGCTGATAGTTACCTTATTTCCCTGATATCCACAGAACTTAATCAACAGATTTCAGTCAATAATCAACTGGCCTTCTGCCAATATAATCTCCGGTAATGATAATGATCTCTGCTCCCCGCACACATACACTTTCACTGACGGATCTG