Homologs in group_4085

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0 homologs were identified in 0 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product

Distribution of the homologs in the orthogroup group_4085

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_4085

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q01245 1.51e-08 59 23 9 269 1 yscD Yop proteins translocation protein D Yersinia enterocolitica

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS08370
Feature type CDS
Gene -
Product EscD/YscD/HrpQ family type III secretion system periplasmic domain-containing protein
Location 1733741 - 1734931 (strand: 1)
Length 1191 (nucleotides) / 396 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_4085
Orthogroup size 1
N. genomes 1

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Genomic region

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03220 type III secretion protein D - -

Protein Sequence

MKVTLSVLSGLHRGAVAHFTVPPSGTTPIVIGADAFNTDITLLDPGIQPVHCRLTADQKGLCLNENNGNTPLSRGLHNIQPGDYILYGKPFECAGISLTAQCASGVKPFSRRKAVVFFSTIMLISLIILVFFIRTPATATLTERFLSAEPYRCLSWEVMDNQLIINGFVTTSAEEKLIAFFMQQDISYRLSVITPDTEQRKLNDWLNSRPNNHLTAELSNACGHLEIQGIRAPHQQDESLTNVLPVMLVSSEESIDDNSTITDEYIKKLDSLINTLQLKSVILDFTFSAQLFSVTLSKSADNTVKKQLNILLDEFNQDFKFNYQLDIRVQPVSKPKLVVRAISLGRVPYVILHDGKKYQAGSAPDKDTRIISINKEQMVLLYKNEQYTITFTDDKK

Flanking regions ( +/- flanking 50bp)

CATTCAAACTGCAGGTGCGTTGGGTATATACACTAAATGATTGTCATACTATGAAAGTTACTTTATCTGTTTTATCGGGTCTGCATCGCGGTGCGGTGGCGCATTTTACAGTGCCGCCCTCCGGCACTACACCCATTGTGATAGGAGCAGATGCATTTAATACTGATATCACGTTACTGGACCCCGGCATTCAGCCTGTACACTGTCGTTTAACAGCGGATCAAAAAGGTCTGTGTCTCAATGAAAACAACGGCAACACCCCCTTGTCCCGGGGACTGCATAACATTCAGCCCGGTGATTATATTTTATACGGGAAGCCATTTGAGTGTGCCGGAATCAGTCTGACAGCACAGTGTGCATCCGGCGTAAAACCATTTTCCCGCCGGAAAGCTGTTGTTTTTTTTAGTACCATAATGTTGATTTCACTGATTATTTTAGTCTTTTTTATTCGGACGCCTGCCACCGCCACATTAACCGAACGATTTTTATCCGCGGAGCCTTATCGTTGCCTCTCGTGGGAGGTTATGGATAACCAATTGATTATAAATGGTTTTGTAACAACCAGTGCGGAGGAAAAATTAATTGCCTTTTTTATGCAGCAGGATATTTCTTACCGCCTGAGTGTCATAACCCCGGACACCGAACAACGGAAATTGAATGACTGGCTAAATTCCCGACCCAATAATCATCTGACCGCTGAATTAAGCAATGCCTGCGGGCACCTTGAAATTCAGGGGATACGGGCACCGCATCAACAGGATGAGTCACTTACCAATGTACTGCCGGTAATGCTTGTATCATCAGAAGAATCTATTGATGACAACTCAACAATCACTGACGAATATATAAAAAAGTTAGATTCACTGATAAATACCCTTCAGCTCAAGAGTGTTATCCTCGATTTTACGTTTTCAGCTCAATTGTTTAGTGTCACTCTCAGCAAGAGTGCAGATAATACAGTTAAAAAACAGTTGAATATACTTCTTGATGAATTTAATCAGGATTTTAAGTTTAATTATCAGCTGGATATCCGGGTGCAGCCGGTCAGTAAACCCAAACTGGTCGTCAGGGCAATTTCACTCGGAAGAGTACCTTACGTTATTTTACATGACGGGAAAAAATATCAGGCAGGCTCCGCACCCGATAAAGACACCCGGATTATTTCTATAAATAAGGAGCAGATGGTGTTGCTGTATAAAAATGAACAGTACACCATCACATTCACAGATGATAAAAAATGATGATGCGTTTGACTGCCTTATAAAAAATCATGCCGGGTTTCTGATGCGGA