Homologs in group_4078

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0 homologs were identified in 0 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product

Distribution of the homologs in the orthogroup group_4078

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_4078

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q06114 1.2e-36 139 39 1 192 1 sctE Type 3 secretion system translocon protein SctE Yersinia pseudotuberculosis serotype I (strain IP32953)
P37131 9.83e-35 134 38 1 192 1 sctE Type 3 secretion system translocon protein SctE Yersinia enterocolitica

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS08285
Feature type CDS
Gene sctE
Product type III secretion system translocon subunit SctE
Location 1718123 - 1719199 (strand: -1)
Length 1077 (nucleotides) / 358 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_4078
Orthogroup size 1
N. genomes 1

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Genomic region

Domains

PF04888 Secretion system effector C (SseC) like family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG5613 Intracellular trafficking, secretion, and vesicular transport (U) U Type III secretion system effector SseC (host membrane pore formation)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K23475 transloator Yersinia infection -

Protein Sequence

MQNVTDLPGVRAAFPAETNPVTGTASSSVQQSGKTPVEPLLVPRETAEQEIKKELIPLDKPDTVLPDNAEEVADKANNIVDKGAHSSWQALITSRDTIEKALAKGNFETELALLLTQIKSDMKEMKVSQIRQAREENTQKIAENHEQLKEAETRFEEAERSRTANKIFGWLSTAVSAIAGAVLVATGVGALAGAMMIASAVTSASSQIINEMAEAGMIDDDVMKYLGPAMTGLQVAVGIATCVVTFGGGAVSAVAQEGVHAGQMLAQTGLSISGSVLDAGAVISGTTASVLANMGNKEIAGSQETKGQMMLLQQAMEKLQNEFGKMISKYQDAMAELSRFSQEKADVTRLVATAATEK

Flanking regions ( +/- flanking 50bp)

AAAGGCCGGCGTGATGCTGACATCTGCCACAGAGCAGGCGGAGGCAGGTAATGCAAAATGTCACTGATTTACCCGGAGTCAGAGCCGCTTTTCCGGCAGAAACCAATCCGGTGACCGGAACTGCATCCTCTTCTGTGCAACAGAGTGGAAAAACACCGGTTGAGCCATTGCTTGTACCCCGGGAGACGGCGGAACAAGAGATAAAAAAAGAGCTAATCCCGCTTGATAAACCGGATACCGTATTGCCGGATAACGCGGAGGAGGTGGCTGATAAAGCCAATAATATTGTTGATAAAGGCGCACACAGCAGTTGGCAGGCGCTGATCACCAGCAGAGATACAATTGAAAAAGCGTTGGCGAAAGGAAACTTTGAAACAGAGCTGGCGCTGCTGCTGACACAGATAAAATCTGACATGAAAGAGATGAAAGTCAGTCAGATTAGGCAGGCACGGGAAGAAAATACCCAGAAAATTGCCGAAAATCACGAACAGCTTAAAGAAGCAGAAACCCGTTTTGAGGAAGCAGAACGTTCTCGGACAGCAAACAAAATATTCGGTTGGCTGAGCACGGCTGTTTCTGCTATCGCGGGCGCGGTTTTGGTAGCAACGGGTGTGGGGGCGCTCGCCGGTGCCATGATGATAGCCAGTGCGGTAACCAGTGCATCTTCTCAGATTATCAATGAGATGGCAGAAGCCGGAATGATTGATGATGACGTAATGAAATATCTGGGGCCTGCTATGACCGGGTTGCAGGTCGCAGTGGGGATTGCAACCTGTGTTGTCACGTTCGGCGGCGGAGCTGTCAGTGCTGTTGCGCAGGAAGGTGTTCATGCCGGGCAGATGCTGGCACAGACCGGGTTATCCATTTCCGGCTCCGTTCTGGATGCGGGAGCGGTTATTTCAGGTACGACGGCATCTGTCCTGGCGAATATGGGCAATAAAGAAATTGCCGGTTCTCAGGAAACAAAAGGTCAGATGATGTTGTTACAGCAGGCAATGGAAAAACTTCAGAACGAGTTTGGCAAAATGATCTCGAAATACCAGGATGCGATGGCTGAGTTATCCCGTTTTTCTCAGGAAAAAGCGGATGTCACCCGGCTGGTTGCAACGGCTGCTACAGAAAAGTAAGACAGTAAGACAGTAAAAAGAAAGTAATCATCATAAAATCAATACATTAA