Homologs in group_4069

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0 homologs were identified in 0 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product

Distribution of the homologs in the orthogroup group_4069

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_4069

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P85101 6.82e-06 50 27 6 169 1 None Ribosome-inactivating protein lychnin Silene chalcedonica
Q00465 0.0001 47 24 13 287 1 None Ribosome-inactivating protein luffin-alpha Luffa aegyptiaca
P33185 0.000676 44 25 7 173 1 None Ribosome-inactivating protein bryodin I Bryonia dioica

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS07740
Feature type CDS
Gene -
Product ribosome-inactivating family protein
Location 1617591 - 1618577 (strand: 1)
Length 987 (nucleotides) / 328 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_4069
Orthogroup size 1
N. genomes 1

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Genomic region

Domains

PF00161 Ribosome inactivating protein

Protein Sequence

MFNKIILIIALSIPLHAYSGLDIQTIEKDFNFRNDAMYLKSIDTLRYSLSDHNNSYGKYVYISEKENKIYKMKINADKNNNTYIHLVFNARNAYMLGFITSNKENNIIKEKYYRFNEDKKSDLIDINNITTFTLPFSGNYTDLERKSTPREKMITNMSSVETAVTILSKHHENKKYDDKTSADLKKSMLQLILLTSESVRFPPIRKWNSEHLKKVNTTTTPFGLEYRKLTNDWSMISNDFKKIYGSHSNNRFNYSFKFGNMMDHPQPYNSTNIHNLCDYANYIPDTPKRDNELSEKSHKLYYIDILGERTYFPENQFMYINYAMTYYY

Flanking regions ( +/- flanking 50bp)

CCGTTAGTATGCAGTAATATTATCAACCACTAATTGAATAGGATGGTATTATGTTTAACAAAATCATACTCATTATCGCCTTGAGTATTCCACTGCATGCTTATTCAGGATTAGACATTCAAACAATAGAGAAAGACTTTAATTTCAGAAATGACGCTATGTATCTAAAATCAATTGACACATTAAGATACTCTCTCAGCGACCATAACAATAGCTACGGTAAATATGTATATATATCTGAAAAGGAAAACAAGATATATAAAATGAAAATAAATGCTGATAAAAATAATAATACATACATACATTTAGTATTCAATGCTAGGAATGCCTATATGCTTGGGTTTATCACCAGCAACAAAGAGAATAATATTATAAAAGAAAAATACTATCGATTTAATGAGGATAAAAAATCAGATCTAATAGATATTAACAATATAACTACTTTTACACTTCCTTTTAGTGGTAATTATACTGATCTAGAAAGAAAATCAACGCCAAGAGAAAAAATGATTACCAATATGTCATCTGTAGAAACAGCTGTCACTATTTTAAGCAAACACCATGAAAATAAAAAATATGATGATAAAACTTCTGCTGATCTAAAAAAATCTATGCTTCAATTAATTTTGCTCACTTCTGAATCAGTAAGGTTCCCTCCAATAAGAAAATGGAATAGTGAGCATTTAAAAAAAGTTAACACTACCACTACACCTTTTGGTCTTGAATATAGAAAACTCACTAATGACTGGTCTATGATAAGTAACGATTTTAAAAAAATATATGGTTCCCACAGTAATAATAGATTTAATTACTCCTTTAAATTTGGAAATATGATGGACCATCCTCAACCTTATAACAGTACTAATATACATAACCTATGCGATTATGCCAATTATATACCTGATACTCCCAAGAGAGATAACGAATTATCAGAAAAATCACATAAACTTTATTACATTGATATCCTTGGTGAAAGAACATATTTCCCTGAAAATCAATTCATGTATATAAATTATGCAATGACATATTATTACTAGTTACACAACTTTATTTTAATAGGAATAAAATGCGAAAAATTATAGTTATA