Homologs in group_518

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01095 FBDBKF_01095 77.9 Morganella morganii S1 sseB Enhanced serine sensitivity protein SseB
EHELCC_00450 EHELCC_00450 77.9 Morganella morganii S2 sseB Enhanced serine sensitivity protein SseB
NLDBIP_03010 NLDBIP_03010 77.9 Morganella morganii S4 sseB Enhanced serine sensitivity protein SseB
LHKJJB_04525 LHKJJB_04525 77.9 Morganella morganii S3 sseB Enhanced serine sensitivity protein SseB
HKOGLL_02520 HKOGLL_02520 77.9 Morganella morganii S5 sseB Enhanced serine sensitivity protein SseB
PMI_RS09140 PMI_RS09140 46.7 Proteus mirabilis HI4320 - enhanced serine sensitivity protein SseB C-terminal domain-containing protein

Distribution of the homologs in the orthogroup group_518

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_518

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AFZ2 1.41e-16 76 36 4 130 3 sseB Protein SseB Shigella flexneri
P0AFZ1 1.41e-16 76 36 4 130 4 sseB Protein SseB Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS07165
Feature type CDS
Gene -
Product enhanced serine sensitivity protein SseB C-terminal domain-containing protein
Location 1492908 - 1493339 (strand: -1)
Length 432 (nucleotides) / 143 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_518
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF14581 SseB protein C-terminal domain

Protein Sequence

MADILPAEPQEVMIEQGTALLLSVPDKTPEDVLGALSGIFKQHKPVRRAFWVMAQEKEDKSADGQVLLIALEFSEESGIDAIISDAAEAAMAHLGDGEHIDFCLLNPDENDGLTHFLTQHTSAFYQRRLGGWLRNAIPVTETQ

Flanking regions ( +/- flanking 50bp)

GTTTTTCTGTCTGAACCTGACACACTGAATCTGAAATACGGAGCTTTATTATGGCGGATATCCTCCCGGCTGAACCCCAGGAAGTGATGATTGAGCAGGGCACTGCATTGCTCCTGAGTGTTCCGGACAAAACACCGGAAGATGTACTTGGCGCACTGTCCGGTATTTTTAAACAGCATAAACCGGTACGCCGGGCATTCTGGGTAATGGCGCAGGAAAAAGAAGATAAAAGCGCGGACGGACAGGTATTACTGATCGCCCTTGAATTCAGTGAAGAGTCCGGGATTGATGCGATTATCAGCGACGCGGCAGAGGCTGCGATGGCACACCTCGGAGACGGCGAACATATTGATTTTTGTCTGTTAAATCCGGATGAAAATGACGGACTGACCCATTTCCTGACACAGCATACCAGCGCATTTTATCAGCGTCGTCTTGGTGGCTGGTTGCGCAATGCGATTCCGGTAACGGAGACGCAGTAATAAGTTATCTGGTGAATGAATACCCCCTGCGCTGATATTCGGAATAATGC