Homologs in group_4059

Help

0 homologs were identified in 0 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product

Distribution of the homologs in the orthogroup group_4059

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_4059

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AB17 3.68e-27 96 68 0 67 4 yccJ Uncharacterized protein YccJ Shigella flexneri
P0AB14 3.68e-27 96 68 0 67 1 yccJ Uncharacterized protein YccJ Escherichia coli (strain K12)
P0AB15 3.68e-27 96 68 0 67 4 yccJ Uncharacterized protein YccJ Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AB16 3.68e-27 96 68 0 67 4 yccJ Uncharacterized protein YccJ Escherichia coli O157:H7

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS06500
Feature type CDS
Gene -
Product YccJ family protein
Location 1353065 - 1353280 (strand: -1)
Length 216 (nucleotides) / 71 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_4059
Orthogroup size 1
N. genomes 1

Actions

Genomic region

Domains

PF13993 YccJ-like protein

Protein Sequence

MKDPHDIAAWAKVRETSVEIAQAIFELAGNDEILAEQIWEEGSDEVLPLAFSKTDADRLYWGEETIERKNV

Flanking regions ( +/- flanking 50bp)

TGTTTTTTACAGCATTTAAATCTCGGCGGATGAAACTAAGGAGCCAGACTATGAAAGACCCACATGATATTGCGGCGTGGGCAAAAGTTCGCGAAACCTCTGTTGAAATTGCACAGGCTATCTTTGAACTGGCCGGTAATGACGAAATTTTAGCAGAACAAATCTGGGAAGAGGGCTCTGATGAGGTGCTGCCACTGGCATTCTCCAAAACAGATGCGGACAGATTATACTGGGGTGAGGAAACCATTGAGAGAAAAAATGTATAATTTTTGAACCATTATCTGCCGTTTATTGCGGTGGATAGTGGTTATACCCA