Homologs in group_4058

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0 homologs were identified in 0 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product

Distribution of the homologs in the orthogroup group_4058

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_4058

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q2JVA4 9.51e-26 105 40 0 130 3 glmU Bifunctional protein GlmU Synechococcus sp. (strain JA-3-3Ab)
Q2JII9 3.76e-25 103 38 0 134 3 glmU Bifunctional protein GlmU Synechococcus sp. (strain JA-2-3B'a(2-13))

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS06485
Feature type CDS
Gene -
Product PPC domain-containing DNA-binding protein
Location 1351106 - 1351561 (strand: -1)
Length 456 (nucleotides) / 151 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_4058
Orthogroup size 1
N. genomes 1

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Genomic region

Domains

PF03479 Plants and Prokaryotes Conserved (PCC) domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1661 General function prediction only (R) R Predicted DNA-binding protein with PD1-like DNA-binding motif, PPC/DUF296 domain

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K06934 uncharacterized protein - -

Protein Sequence

MKSTLTPLSGARFLALRLLPGDDVLPVLHRYVQQHHLQSAFIAGCVGSLTDVALRFAGQEKTDYLTGKFEIVSLIGTLDAQGEHLHLCVSDENGHTRGGHMMPGCTVRTTLELIIGELEQVVFTREMCAYSGYEELVVTPKTKTSSTNCDQ

Flanking regions ( +/- flanking 50bp)

AATAAATATAAAGATATGCCGTTAATATTGTGTATTTACAGGGATATTCAATGAAATCAACACTCACGCCTCTTTCCGGTGCGCGGTTTCTCGCACTGCGTTTATTACCCGGAGATGATGTTCTGCCGGTACTGCACCGGTATGTACAACAGCATCATCTGCAATCCGCTTTTATTGCCGGGTGTGTCGGCAGCCTGACCGATGTCGCACTGCGCTTTGCCGGGCAGGAAAAAACCGATTATCTGACCGGGAAATTCGAAATTGTCTCACTGATCGGCACGCTGGATGCACAGGGTGAGCACCTGCATCTGTGTGTATCCGATGAAAACGGGCACACTCGTGGCGGGCATATGATGCCGGGCTGTACGGTACGCACCACACTTGAGTTAATTATCGGCGAACTGGAGCAGGTGGTTTTCACGCGTGAAATGTGCGCGTACTCAGGGTATGAAGAGCTGGTGGTAACACCAAAAACAAAAACATCATCAACTAACTGTGATCAATAAAGGTGCCTGTATGAACGCATCACAACCCCTGCTTTCCAGTCGTACACTTG