Homologs in group_3645

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4 homologs were identified in 2 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
F4V73_RS06005 F4V73_RS06005 21.4 Morganella psychrotolerans - spore coat U domain-containing protein
PMI_RS05175 PMI_RS05175 26.4 Proteus mirabilis HI4320 - fimbrial protein
PMI_RS05180 PMI_RS05180 31.5 Proteus mirabilis HI4320 - fimbrial protein
PMI_RS05185 PMI_RS05185 19.3 Proteus mirabilis HI4320 - fimbrial protein

Distribution of the homologs in the orthogroup group_3645

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3645

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS05990
Feature type CDS
Gene -
Product spore coat U domain-containing protein
Location 1271026 - 1271496 (strand: 1)
Length 471 (nucleotides) / 156 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3645
Orthogroup size 5
N. genomes 2

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Genomic region

Domains

PF05229 Spore Coat Protein U domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG5430 Extracellular structures (W) W Fimbrial subunit ScuA/B, ScuA/B/SCPU domain

Protein Sequence

MKKIKYLGLAVMLSTSATTFASTITSEKVSANMNVYLTVLKACTVSVSDMNFGNQFSNAGEQTTDATASVTCTQGTNYKLTADAADEYMLEDNSGNKVSYALYTDQAGKIPMTTGTAETGTGSAQQLKIYGKIAANTLKQAPAGVYKDTVSILVDY

Flanking regions ( +/- flanking 50bp)

ATGATAATTATATAAATAAACACAGCACTCCCCACTAAGGTAAACCCGCGTTGAAAAAGATTAAATATTTAGGTTTAGCAGTGATGTTATCTACCTCTGCGACTACTTTTGCCAGTACGATTACATCAGAAAAAGTTAGTGCGAACATGAATGTTTATCTGACTGTACTTAAAGCCTGTACGGTTTCTGTCAGTGATATGAATTTCGGTAACCAGTTCAGTAATGCTGGTGAGCAAACCACGGATGCTACAGCCTCCGTGACATGTACCCAGGGAACTAACTATAAATTAACGGCCGATGCCGCAGATGAATATATGCTGGAAGATAACAGTGGTAATAAAGTCTCTTATGCTTTATATACCGACCAGGCAGGTAAAATTCCGATGACAACCGGAACAGCAGAAACCGGTACCGGTTCTGCCCAGCAATTAAAAATCTACGGTAAAATTGCAGCAAATACACTGAAACAGGCTCCGGCTGGTGTTTATAAAGATACGGTTTCTATTTTAGTAGATTATTGATCACACACAAAACGCAAGGAGTCTTTATGACTCCTTTTCCGTCTTATACC