Homologs in group_4037

Help

0 homologs were identified in 0 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product

Distribution of the homologs in the orthogroup group_4037

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_4037

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS05855
Feature type CDS
Gene -
Product helix-turn-helix transcriptional regulator
Location 1246316 - 1246867 (strand: -1)
Length 552 (nucleotides) / 183 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_4037
Orthogroup size 1
N. genomes 1

Actions

Genomic region

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1396 Transcription (K) K Transcriptional regulator, contains XRE-family HTH domain

Protein Sequence

MYEEKNMSKLRRTKGSVVRPSTEAALVKLGKDIEFARRVRGIPADRFANSAGISRSTLHRLESGNGAGISLNTLAMVLTVLGKLDLLSNLVDMRNDDIGLSMLRENVMQNAKTLHSKGAKAGVVIRPEATMVKRASGTAVTKRSTKSNEAKRQENQRTLVVSSSGRTSSLLSRLKATRDSSGS

Flanking regions ( +/- flanking 50bp)

ATGTTATGATTGTATGTATCACAGATGAGACGTAGCTGAGTGAGACGAAGATGTACGAAGAAAAAAATATGAGTAAACTTCGCCGGACAAAAGGCTCGGTTGTACGGCCTTCAACCGAAGCAGCTTTGGTTAAGTTAGGCAAGGATATCGAATTTGCACGTAGAGTTAGAGGGATCCCCGCTGATAGATTTGCAAACTCAGCGGGAATCTCGCGATCTACTTTACATCGACTTGAGAGTGGTAATGGTGCCGGGATCTCACTTAACACGCTTGCGATGGTGCTCACTGTTCTTGGTAAGCTTGATCTCTTAAGTAATTTGGTCGACATGCGTAACGATGATATCGGTCTATCTATGCTGCGTGAAAATGTCATGCAAAACGCAAAGACGCTCCATAGTAAGGGTGCCAAAGCAGGTGTCGTGATCCGGCCGGAGGCGACAATGGTGAAACGAGCTTCAGGTACAGCGGTCACTAAGAGATCGACAAAATCTAATGAAGCAAAACGGCAGGAAAATCAGAGGACGTTGGTGGTCAGCTCGTCAGGACGTACATCATCGCTGCTCTCTCGCTTAAAAGCTACACGAGACTCTTCCGGCTCATGATTAGAGAATTTATATGAGACAAAGACTTTACGTTTGGATGGATGGTCAGG