Homologs in group_974

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_05385 FBDBKF_05385 89.5 Morganella morganii S1 abgR HTH-type transcriptional regulator AbgR
EHELCC_12205 EHELCC_12205 89.5 Morganella morganii S2 abgR HTH-type transcriptional regulator AbgR
NLDBIP_12545 NLDBIP_12545 89.5 Morganella morganii S4 abgR HTH-type transcriptional regulator AbgR
LHKJJB_12405 LHKJJB_12405 89.5 Morganella morganii S3 abgR HTH-type transcriptional regulator AbgR
HKOGLL_11020 HKOGLL_11020 89.5 Morganella morganii S5 abgR HTH-type transcriptional regulator AbgR
PMI_RS07240 PMI_RS07240 56.4 Proteus mirabilis HI4320 - LysR family transcriptional regulator

Distribution of the homologs in the orthogroup group_974

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_974

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0DV33 2.2e-07 54 40 0 69 1 admX HTH-type transcriptional regulator AdmX Serratia plymuthica
P77744 3.55e-07 54 21 7 262 3 abgR HTH-type transcriptional regulator AbgR Escherichia coli (strain K12)
P77171 2.71e-06 51 39 0 58 3 ydcI Uncharacterized HTH-type transcriptional regulator YdcI Escherichia coli (strain K12)
P52044 1.06e-05 49 30 1 98 3 ygfI Uncharacterized HTH-type transcriptional regulator YgfI Escherichia coli (strain K12)
P42427 1.8e-05 48 35 0 68 3 tfdT HTH-type transcriptional regulator TfdT Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197)
P03030 2.89e-05 48 33 0 66 3 lysR Transcriptional activator protein LysR Escherichia coli (strain K12)
Q00678 3.76e-05 48 33 0 81 3 nocR Regulatory protein NocR Agrobacterium fabrum (strain C58 / ATCC 33970)
P0A9F6 3.93e-05 48 34 0 76 1 gcvA Glycine cleavage system transcriptional activator Escherichia coli (strain K12)
P0A9F7 3.93e-05 48 34 0 76 3 gcvA Glycine cleavage system transcriptional activator Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0A9F8 3.93e-05 48 34 0 76 3 gcvA Glycine cleavage system transcriptional activator Escherichia coli O157:H7
Q05840 6.6e-05 47 35 0 68 3 clcR HTH-type transcriptional regulator ClcR Pseudomonas putida
P35112 0.000138 46 32 0 81 3 nocR Regulatory protein NocR Agrobacterium tumefaciens (strain T37)
O35038 0.000146 46 35 1 71 3 ytlI HTH-type transcriptional regulator YtlI Bacillus subtilis (strain 168)
P30864 0.000194 45 33 1 80 3 yafC Uncharacterized HTH-type transcriptional regulator YafC Escherichia coli (strain K12)
Q6HPH4 0.000207 45 44 0 58 3 czcR HTH-type transcriptional regulator CzcR Bacillus thuringiensis subsp. konkukian (strain 97-27)
Q63H01 0.000207 45 44 0 58 3 czcR HTH-type transcriptional regulator CzcR Bacillus cereus (strain ZK / E33L)
Q73EY2 0.000207 45 44 0 58 3 czcR HTH-type transcriptional regulator CzcR Bacillus cereus (strain ATCC 10987 / NRS 248)
A0R8S0 0.00021 45 44 0 58 3 czcR HTH-type transcriptional regulator CzcR Bacillus thuringiensis (strain Al Hakam)
Q81VJ1 0.000213 45 44 0 58 3 czcR HTH-type transcriptional regulator CzcR Bacillus anthracis
Q81IX0 0.000321 45 44 0 58 3 czcR HTH-type transcriptional regulator CzcR Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)
P52665 0.000346 43 35 0 64 3 budR HTH-type transcriptional regulator BudR (Fragment) Klebsiella aerogenes
Q44311 0.000372 45 44 0 58 3 soxR HTH-type transcriptional regulator SoxR Arthrobacter sp. (strain TE1826)
Q08597 0.000583 44 23 1 99 3 nac Nitrogen assimilation regulatory protein nac Klebsiella aerogenes
Q04778 0.000718 43 41 0 58 3 alsR HTH-type transcriptional regulator AlsR Bacillus subtilis (strain 168)
Q46M57 0.001 43 33 0 68 1 tfdR HTH-type transcriptional regulator TdfR Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197)
Q46M54 0.001 43 33 0 68 1 tfdS HTH-type transcriptional regulator TfdS Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS05840
Feature type CDS
Gene -
Product LysR family transcriptional regulator
Location 1241978 - 1242841 (strand: -1)
Length 864 (nucleotides) / 287 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_974
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00126 Bacterial regulatory helix-turn-helix protein, lysR family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0583 Transcription (K) K DNA-binding transcriptional regulator, LysR family

Protein Sequence

MFFSRKLEAFMAVVEYGSLSKAAKVMNRTTPPVAKSIKDFEILLGKRLFKREKFGMSLTREGLELYNDLKDLYTQEKEITKKHISGTICNKINVFYDWGKSKYIDALYRAAFKANVQINVFRFNYDCIDEINDFEGNTLLLSSESVVSERFALLRNLPQGQIGICCRQSLFQSCDNNLQTLLSRCVWLCEPLLYESPLLKTLLQQHDEQSKHEHVHLIDSTHGYLHLLIDGDYLCFIDEHPKTSPYSSELIFLPLSQSEAENSCHLYKSKSHASVLNKIMDCIENLK

Flanking regions ( +/- flanking 50bp)

ATAAGTAATTGTTTTATTGATTGTTTACCACAGCAATAGGAATCGACATTATGTTTTTTTCAAGGAAGTTAGAAGCTTTTATGGCTGTTGTCGAATACGGCTCACTCAGCAAAGCAGCGAAAGTGATGAACAGAACAACGCCCCCTGTCGCAAAATCGATTAAAGATTTCGAGATTTTGCTGGGGAAGCGTTTATTTAAGCGTGAAAAATTTGGTATGAGCCTGACAAGGGAAGGTCTGGAATTGTATAATGACCTGAAAGATCTGTATACACAGGAAAAAGAAATTACTAAAAAACATATCAGCGGAACGATATGTAATAAGATAAATGTATTTTATGACTGGGGGAAAAGTAAATATATTGATGCATTATACAGAGCTGCATTTAAAGCAAATGTGCAAATTAATGTATTTCGGTTTAATTATGATTGTATTGATGAAATAAACGATTTTGAAGGAAATACATTGCTGCTTTCTTCTGAGTCGGTTGTCAGTGAGCGTTTTGCTTTGTTGCGTAATTTGCCGCAAGGGCAGATTGGTATCTGCTGCCGGCAATCCCTTTTTCAGTCCTGTGATAATAATCTGCAAACATTATTATCCCGCTGTGTCTGGTTATGTGAGCCGCTGTTATATGAAAGCCCGCTTCTGAAAACACTGTTACAACAGCATGATGAACAGAGCAAACATGAACATGTACACTTAATTGACAGCACGCACGGTTATCTGCATCTGTTAATTGACGGGGATTATCTCTGTTTTATTGATGAACACCCGAAAACATCACCATACAGCAGTGAGCTTATTTTTTTACCACTGTCGCAGAGTGAGGCAGAAAACAGTTGTCATCTGTACAAATCAAAATCACATGCGAGTGTGCTGAATAAGATTATGGATTGTATTGAGAATTTGAAATAAAGGAGGGCAGTGCAGAAATGGTGGTGGGAGAAGGATTCGAACCTTCGAAG