Homologs in group_2600

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_02760 FBDBKF_02760 83.8 Morganella morganii S1 - HTH cro/C1-type domain-containing protein
EHELCC_03230 EHELCC_03230 83.8 Morganella morganii S2 - HTH cro/C1-type domain-containing protein
NLDBIP_00230 NLDBIP_00230 83.8 Morganella morganii S4 - HTH cro/C1-type domain-containing protein
LHKJJB_01805 LHKJJB_01805 83.8 Morganella morganii S3 - HTH cro/C1-type domain-containing protein
HKOGLL_01845 HKOGLL_01845 83.8 Morganella morganii S5 - HTH cro/C1-type domain-containing protein

Distribution of the homologs in the orthogroup group_2600

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2600

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS05235
Feature type CDS
Gene -
Product helix-turn-helix transcriptional regulator
Location 1114870 - 1115667 (strand: 1)
Length 798 (nucleotides) / 265 (amino acids)
In genomic island -

Contig

Accession NZ_VXKB01000001
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2600
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF13560 Helix-turn-helix domain
PF17765 MmyB-like transcription regulator ligand binding domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1396 Transcription (K) K Transcriptional regulator, contains XRE-family HTH domain

Protein Sequence

MSDKARTRPELADFLRTKRESLTPASAGLPHTSRRRTPGLRREEVAALAGVGLTWYTWLEQGREIGVSTRFLDNLARTLQLNDAERQHLYLLAHQRVPETTSETEHHVPAVITRMLDDFPDSYLCYVLNLHWDVLAYNDKADRYFHFSDATPKMRNFLYMLFTDPRYQTRFTDWDIDAQRLLASFRRDYARTKQDPAIQLLIRTLCEESPVFNRLWNIHEIYQPCNGMREIEFDGQRETYEYASLTFDIDKSNRLLVYTPVSDEE

Flanking regions ( +/- flanking 50bp)

TTATTGCAACAGGCTGACAAAACATAACTGATGACACAGGACTACCGACAATGAGTGATAAAGCACGAACCCGCCCGGAACTGGCTGATTTCCTGCGGACAAAACGCGAAAGCCTGACACCGGCAAGTGCAGGTCTGCCGCATACCTCGCGGCGGCGCACTCCCGGACTGCGGCGGGAAGAAGTTGCAGCACTCGCGGGTGTCGGGCTGACCTGGTACACCTGGCTTGAGCAGGGTCGCGAAATTGGTGTATCCACCCGCTTTCTGGATAATCTGGCGCGGACGTTGCAGCTCAATGATGCTGAACGTCAGCACCTTTATCTGCTGGCACACCAGCGGGTACCGGAAACCACAAGTGAAACGGAGCATCATGTCCCCGCTGTGATCACCCGTATGCTGGATGATTTTCCGGACAGTTATCTTTGTTATGTACTGAATCTGCATTGGGATGTACTGGCTTATAATGACAAAGCGGACAGATATTTTCATTTTTCTGATGCCACGCCCAAAATGCGCAACTTTTTATATATGCTGTTTACTGATCCGCGCTATCAGACCCGTTTTACTGACTGGGATATTGATGCACAGCGCCTGCTCGCCAGTTTCCGCCGTGATTATGCGCGGACAAAACAAGACCCCGCGATTCAGTTGCTTATCCGTACATTATGTGAGGAATCCCCGGTATTTAACCGGCTGTGGAATATTCATGAGATTTATCAGCCCTGTAACGGAATGCGGGAGATTGAATTTGACGGACAGCGGGAAACCTACGAGTACGCGTCACTGACATTTGATATTGATAAATCAAACCGGCTGCTGGTGTATACGCCGGTCAGTGATGAGGAATAACCATTAAAACAACCGCAGCAACTGCACAGTATAACAATATGGTGCAACAG